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BioLiP
>protein
GEFVVEKVLDRRVVKGKVEYLLKWKGGSDEDNTWEPEENLDCPDLIAEFLQSQK

The query sequence (length=54) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1guw:A 73 53 0.9444 0.6986 0.9623 2.01e-32 6d07:A, 6d07:B, 6d08:A, 6d08:B
2 3tzd:A 58 54 0.8333 0.7759 0.8333 4.02e-28 3dm1:A, 3dm1:C, 3dm1:G, 3dm1:E, 2l11:A
3 2rvn:A 83 52 0.7222 0.4699 0.7500 3.38e-25
4 8uxq:A 170 50 0.7222 0.2294 0.7800 4.00e-23 3fdt:A
5 8uxq:A 170 48 0.2407 0.0765 0.2708 0.16 3fdt:A
6 6asz:A 53 52 0.6111 0.6226 0.6346 1.83e-19 6at0:A, 1kna:A, 1kne:A, 6mha:A, 1q3l:A
7 3gv6:A 56 52 0.4630 0.4464 0.4808 1.07e-13 3i90:A, 3i90:B
8 5epl:B 58 52 0.4630 0.4310 0.4808 4.00e-13 5epl:A
9 5eq0:A 55 47 0.4630 0.4545 0.5319 4.17e-13 3i91:A
10 5epk:A 54 47 0.4444 0.4444 0.5106 5.54e-13 3h91:A, 3h91:B
11 4u68:A 64 49 0.4444 0.3750 0.4898 3.74e-12 4quf:A, 4quf:B, 4quf:C, 4quf:D, 4quf:E, 4quf:F, 4u68:B, 4u68:C
12 5ejw:A 80 47 0.4444 0.3000 0.5106 1.10e-11 5epj:A, 2kvm:A, 2l12:A, 2l1b:A, 4mn3:A, 8sii:A, 8sii:B, 6v2r:A, 4x3k:A, 4x3k:B, 4x3s:B, 4x3s:A, 4x3t:A, 4x3t:B, 4x3t:C, 4x3t:D, 4x3t:E, 4x3t:F, 4x3u:A, 4x3u:B
13 7vrf:A 61 50 0.4444 0.3934 0.4800 5.96e-11 7vrf:B
14 7n27:A 57 49 0.4444 0.4211 0.4898 9.84e-11 7n27:D, 7n27:B, 7n27:C, 7n27:E, 7n27:F
15 3qo2:A 61 48 0.4444 0.3934 0.5000 3.05e-10 7m5u:A, 3qo2:D, 3qo2:B, 3qo2:C, 3r93:A, 3r93:D, 3r93:B, 3r93:C, 3svm:A, 6v2s:A, 6v2s:B
16 1pfb:A 55 52 0.4444 0.4364 0.4615 5.74e-10 1pdq:A
17 7vyw:A 47 42 0.3889 0.4468 0.5000 6.79e-10
18 6v41:AAA 61 54 0.4259 0.3770 0.4259 1.28e-09
19 6v2d:G 64 49 0.4259 0.3594 0.4694 7.01e-09 5jjz:A, 7slw:A, 7slw:B, 7slw:C, 7slw:D, 7slw:E, 7slw:F, 8sp6:A, 8sp6:B, 8sp6:C, 8sp6:D, 8sp6:E, 8sp6:F, 6v2d:I, 6v2d:K, 6v2d:A, 6v2d:C, 6v2d:E, 6v2h:A, 6v2h:C, 6v2h:E, 6v2h:G, 6v2h:I, 6v2h:K, 6v3n:A, 6v3n:B, 6v8w:A, 6v8w:B, 6v8w:C, 6v8w:D, 6v8w:E, 6v8w:F, 6v8w:G, 6v8w:H, 6v8w:I, 6v8w:J, 6v8w:K, 6v8w:L, 6v8w:M, 6v8w:N, 6v8w:O, 6v8w:P, 6v8w:Q, 6v8w:R, 6v8w:S, 6v8w:T, 6v8w:U, 6v8w:V, 6v8w:W, 6v8w:X, 6v8w:Y, 6v8w:Z
20 2rsn:A 75 39 0.3704 0.2667 0.5128 9.91e-06 3g7l:A
21 7ubu:A 708 58 0.4444 0.0339 0.4138 2.00e-05 4ft4:A, 4ft4:B
22 4fsx:A 680 58 0.4444 0.0353 0.4138 2.01e-05 4fsx:B, 4ft2:B, 4ft2:A
23 2b2w:A 177 25 0.2778 0.0847 0.6000 7.86e-04 5afw:A, 2b2t:A, 2b2u:A, 2b2v:A, 4nw2:A, 4nw2:C, 4o42:A
24 5e4w:C 105 52 0.4259 0.2190 0.4423 0.001 5e4w:D, 5e4x:A
25 5e4w:C 105 25 0.1852 0.0952 0.4000 3.2 5e4w:D, 5e4x:A
26 6hw2:B 69 48 0.2222 0.1739 0.2500 0.003 8jzw:C, 8jzw:D, 8jzw:A, 8jzw:B, 5t1i:A, 5t1i:B
27 3q6s:B 67 46 0.2222 0.1791 0.2609 0.007 3q6s:A, 3q6s:C, 3q6s:D, 5t1g:A
28 6q3m:C 219 37 0.2222 0.0548 0.3243 0.20 6q3m:A, 6q3m:B
29 6ryr:W 708 36 0.2222 0.0169 0.3333 0.33 2l75:A, 1mm2:A, 6q3m:D, 6ryu:W, 6ryu:V
30 4ov9:A 380 44 0.2778 0.0395 0.3409 0.41 4ov4:A
31 6s47:Bi 952 40 0.2222 0.0126 0.3000 0.56
32 9gd1:W 849 39 0.2407 0.0153 0.3333 0.62
33 7tn2:W 895 40 0.2593 0.0156 0.3500 0.76 9gd2:W, 9gd3:W
34 3ui2:A 234 46 0.2593 0.0598 0.3043 0.83 3dep:A, 2hug:A
35 3ui2:A 234 25 0.1852 0.0427 0.4000 3.6 3dep:A, 2hug:A
36 6guu:B 204 29 0.2407 0.0637 0.4483 1.0 6guu:A
37 7eip:A 966 19 0.1852 0.0104 0.5263 1.5 7eiq:A, 7eir:A, 7eis:A, 7yke:A
38 6g0l:M 855 26 0.2037 0.0129 0.4231 1.8 7nkx:W, 5o9g:W
39 6ftx:W 878 26 0.2037 0.0125 0.4231 2.0 6g0l:W, 5j70:A, 5j70:B, 3mwy:W, 3ted:A
40 5e62:A 424 30 0.2222 0.0283 0.4000 2.4 5e62:C, 5e65:A, 5e65:C, 5e66:A
41 3tmk:A 216 46 0.3148 0.0787 0.3696 3.5 1tmk:A, 1tmk:B, 2tmk:A, 2tmk:B, 3tmk:B, 3tmk:C, 3tmk:D, 3tmk:E, 3tmk:F, 3tmk:G, 3tmk:H
42 8s4t:A 136 31 0.2222 0.0882 0.3871 9.2 8s4t:B, 8s4t:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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