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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GEFCVIPKMDGQLVEKLGQRLLPWMDRLSSEQLNPSIYVGLRLSSMQAGTKENLYLHNLKLHYQQCLGCQTKISGGSLAL
YLLALRANCELLGSRKGDRMVSQLKWFLEDEKKAIGHHHEGHPHTSYYQYGLSILALCVHRKRVHDSVVGKLLYAVEHDY
FTYQGHLSVDTEAMAGLAFTCLERFNFNSDLRPRITTAIETVREKILKAQAPEGYFGNIYSTPLALQMLMTSPGVGLGPA
CLKARKSLLLSLQDGAFQNPMMISQLLPVLNHKTYLNLISPDCQAPRVMLVPATEDPVHLSEVSVTLKVSSVLPPYERTV
SVFAGASLEDVLNRARDLGEFTYGTQASLSGPYLTSVLGKEAGDREYWQLLRVPDTPLLQGIADYKPKNGETIELRLVKM

The query sequence (length=400) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8ixt:A 401 401 0.9925 0.9900 0.9900 0.0 8ixu:A
2 2bb5:A 409 410 0.7500 0.7335 0.7317 0.0 2bb5:B, 5np4:A, 5nrp:A, 5nsa:A, 7qbd:A, 7qbd:B, 7qbe:A, 7qbe:C, 7qbf:A, 7qbg:C, 4zrp:A, 4zrp:B, 4zrq:A, 4zrq:B
3 7qbg:A 381 398 0.7325 0.7690 0.7362 0.0
4 2bb6:A 414 411 0.6900 0.6667 0.6715 0.0 2bb6:B, 2bb6:C, 2bb6:D, 2bbc:A, 2v3n:A, 2v3p:A
5 4kki:A 398 402 0.2825 0.2839 0.2811 4.30e-33 4kkj:A
6 3kq4:A 385 411 0.2975 0.3091 0.2895 2.96e-25 3kq4:C, 3kq4:E, 2pmv:A, 2pmv:C
7 7vx0:B 680 53 0.0500 0.0294 0.3774 0.62 7vx0:A, 7vyj:A, 7vyj:B, 7vyo:A, 7vyo:B, 7vyp:A, 7vyp:B, 7vzn:A, 7vzn:B, 7vzq:A, 7vzq:B, 7vzu:A, 7vzu:B, 7vzy:A, 7vzy:B, 7vzz:A, 7vzz:B
8 6rxu:UJ 1090 102 0.0625 0.0229 0.2451 3.7 5oql:G, 6rxt:UJ, 6rxv:UJ, 6rxy:UJ, 6rxz:UJ
9 5fal:A 435 40 0.0450 0.0414 0.4500 4.2 5fan:A, 4kec:A
10 7a9w:A 513 141 0.0725 0.0565 0.2057 5.3 7a9x:A
11 6s8f:F 2571 36 0.0325 0.0051 0.3611 5.6 7mq8:NR, 7mq9:NR, 7mqa:NR, 6s8f:H
12 4oev:A 494 53 0.0375 0.0304 0.2830 6.2 4oeu:A, 4oeu:B, 4oev:B
13 8xus:B 1063 112 0.0650 0.0245 0.2321 8.5 8if2:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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