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BioLiP
>protein
GEFAQALKEFAKALKEFAWALKEFAQALKG

The query sequence (length=30) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6g6f:C 30 30 1.0000 1.0000 1.0000 3.22e-13 6g6f:A, 6g6f:B, 6g6f:F, 6g6f:G
2 6g6a:B 30 30 0.8667 0.8667 0.8667 4.62e-11 6g6b:A, 6g6c:H, 6g6c:I, 6g6c:P, 6g6c:Q, 6g6c:R, 6g6c:S, 6g6c:U, 6g6c:X
3 5ez8:E 30 30 0.8333 0.8333 0.8333 1.11e-10 5ez8:G, 5ez8:A, 7nfj:C, 7nfj:E, 4pna:B, 4pna:D, 4pna:A, 4pna:G
4 7bo9:A 30 30 0.7333 0.7333 0.7333 2.45e-10 7bo9:D
5 4pnb:D 30 30 0.6000 0.6000 0.6000 1.39e-09
6 8b16:A 30 30 0.7333 0.7333 0.7333 3.21e-09 8b16:L, 8b16:H, 8b16:J, 8b16:D, 7bas:B, 7bas:A
7 6g68:H 30 30 0.6000 0.6000 0.6000 3.95e-09 6g68:L, 6g68:M, 6g68:O, 6g69:I, 6g69:M
8 6eiz:A 30 30 0.6667 0.6667 0.6667 5.55e-09 6eiz:C, 6eiz:E, 4pn9:C, 4pn9:E
9 7bat:B 30 30 0.6000 0.6000 0.6000 8.71e-09 7baw:D, 7baw:F
10 5ez9:F 30 30 0.6333 0.6333 0.6333 3.72e-08 5ez9:B, 5ezc:F, 5ezc:B, 7nfn:C, 7nfn:G, 7nfn:I, 7nfn:M
11 7qwb:E 30 30 0.7000 0.7000 0.7000 3.80e-08 6zt1:D, 6zt1:F, 6zt1:A, 6zt1:H, 6zt1:J
12 7a1t:C 30 30 0.7000 0.7000 0.7000 3.80e-08 7a1t:E, 7bim:D, 7bim:F, 7bim:H, 7bim:M, 7bim:P, 7bim:R, 7bim:j, 7bim:U, 7bim:W, 7bim:a, 7bim:c, 7bim:B, 7bim:g, 7bim:i, 7qwd:B, 7qwd:E, 7qwe:B, 7qwe:C, 7qwe:F
13 7bau:D 30 30 0.5667 0.5667 0.5667 9.98e-08 7bau:J, 7bau:E, 7bau:G, 7bau:I
14 7qwa:C 30 30 0.5667 0.5667 0.5667 3.90e-07 7qwa:D
15 4pn8:H 30 30 0.3333 0.3333 0.3333 0.12 4pn8:J
16 4ezc:B 346 27 0.3333 0.0289 0.3704 4.2 4ezc:A, 4ezc:C, 4ezd:A, 4ezd:C, 4ezd:B
17 3ug4:C 484 24 0.3333 0.0207 0.4167 5.7 3ug4:A, 3ug4:B, 3ug4:D, 3ug4:E, 3ug4:F, 3ug5:A, 3ug5:B, 3ug5:C, 3ug5:D, 3ug5:E, 3ug5:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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