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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GEFAAARESERQLRLRLCVLNEILGTERDYVGTLRFLQSAFLHRIRQNVADSVEKGLTEENVKVLFSNIEDILEVHKDFL
AALEYCLHPEPQSQHELGNVFLKFKDKFCVYEEYCSNHEKALRLLVELNKIPTVRAFLLSCMLLGGDIPLEGYLLSPIQR
ICKYPLLLKELAKRTPGKHPDHPAVQSALQAMKTVCSNINETKRQMEKLEALEQLQSHIEGWEGSNLTDICTQLLLQGTL
LKISAGNIQERAFFLFDNLLVYCKRKSLYIFRGRINTEVMEVENVEDGTADYHSNGYTVTNGWKIHNTAKNKWFVCMAKT
AEEKQKWLDAIIREREQRESL

The query sequence (length=341) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8tua:A 1329 342 0.9501 0.2438 0.9474 0.0 5d3x:A, 5d3x:B, 5d3y:A, 5d3y:B, 5fi0:A, 5fi0:C, 5fi0:E, 5fi0:G
2 6nf1:A 550 321 0.2610 0.1618 0.2773 1.28e-23 3bji:A, 3bji:B, 3ky9:A, 3ky9:B, 6new:A, 6nfa:A, 2vrw:B
3 5hzi:A 476 122 0.1202 0.0861 0.3361 5.53e-14 5djt:A, 5dju:A, 5dju:C, 5efw:A, 5hzi:B, 5hzj:A, 5hzj:B, 5hzk:B, 5hzk:D, 7pgx:AAA, 7pgy:AAA, 7pgz:AAA, 7ph0:AAA, 2v0u:A, 2v0w:A, 2v1a:A, 2v1b:A
4 7g82:B 245 225 0.1789 0.2490 0.2711 9.09e-09 7g85:B, 7g86:B, 7g88:B, 7g89:B, 7g8b:B, 7g8d:B, 7g8e:B, 7g8g:B, 7g8h:B, 7g8k:B, 7g8l:B, 7g8o:B, 7g8q:B, 7g8t:B, 7g8u:B, 7g8z:B, 7g94:B, 7g95:B, 7g96:B, 7g98:B, 7g99:B, 7g9a:B, 7g9b:B, 7g9c:B, 7g9d:B, 7g9e:B, 7g9f:B, 7g9g:B, 7g9h:B
5 6s4c:A 185 86 0.0821 0.1514 0.3256 0.57
6 4db8:B 239 44 0.0528 0.0753 0.4091 0.96
7 5bk7:H 369 112 0.0850 0.0786 0.2589 1.6 5bk7:A, 5bk7:B, 5bk7:C, 5bk7:D, 5bk7:E, 5bk7:F, 5bk7:G, 6c8t:A, 6c8t:B, 6c8t:C, 6c92:A, 6c92:B, 6c92:C, 6c92:D, 6c9b:B, 5dj3:A, 5dj3:B, 5dj3:C, 5dj3:D
8 3jd5:B 217 39 0.0411 0.0645 0.3590 5.5 6neq:B, 6nf8:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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