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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GEEQMRLPSADVYRFAEPDSEENIIFEGIPIIKAGTVIKLIERLTYHMYADPNFVRTFLTTYRSFCKPQELLSLIIERFE
IPEPEPTEADRIAIENGDQPLSAELKRFRKEYIQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGKAMKKW
VESITKIIQRKKIARDTFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEI
NSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSR
QKKILEEAHELSEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQN
QPYCLRVESDIKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRNPKPLPRFPKKYSYPLKSPGVRP

The query sequence (length=466) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8xjj:A 473 469 0.9979 0.9831 0.9915 0.0 7avi:A, 7avi:B, 7avl:A, 7avl:B, 7avs:A, 7avs:B, 7avt:A, 7avt:B, 7avu:A, 7avu:B, 7avv:A, 6bvi:B, 6bvj:B, 6bvk:B, 6bvl:B, 6bvm:B, 6cuo:B, 6cup:B, 6cur:B, 6d55:B, 6d56:B, 6d59:B, 6d5e:B, 6d5g:B, 6d5h:B, 6d5j:B, 6d5l:B, 6d5m:S, 6d5v:S, 6d5w:S, 6epm:S, 6epn:S, 6epo:S, 6epp:S, 4nyi:S, 4nyj:S, 4nym:S, 5ove:A, 5ovf:A, 5ovg:A, 5ovh:A, 5ovi:A, 6scm:A, 6sfr:A, 6sfr:B, 7uks:A, 4urz:S, 6v94:B, 6v9f:B, 6v9j:B, 6v9l:B, 6v9m:B, 6v9n:B, 6v9o:B, 5wfo:N, 5wfp:N, 5wfq:N, 5wfr:N
2 4urw:S 453 470 0.9506 0.9779 0.9426 0.0 8be6:S, 8be7:S, 8be8:S, 8be9:S, 8bea:S, 7ukr:A, 7ukr:B, 4uru:S, 4urv:S, 4urx:S, 4ury:S
3 8t5m:A 463 471 0.8090 0.8143 0.8004 0.0 8t5g:A, 8t5r:A, 8uc9:A, 8uh0:A
4 4mgz:E 632 251 0.1330 0.0981 0.2470 6.77e-20 3cf6:E, 4mgi:E, 4mgk:E, 4mgy:E, 4mh0:E
5 4l9m:A 522 447 0.2189 0.1954 0.2282 2.03e-13
6 3dls:A 285 91 0.0622 0.1018 0.3187 0.15 3dls:C, 3dls:B, 3dls:D, 3dls:E, 3dls:F
7 7v4y:A 402 35 0.0322 0.0373 0.4286 0.35
8 6t6x:A 253 57 0.0408 0.0751 0.3333 0.96 6t6y:A, 6t6z:A, 6t70:A
9 5gan:B 1781 63 0.0343 0.0090 0.2540 1.3 4bgd:A, 5gao:B, 5gap:B, 5nrl:B, 5zwm:D, 5zwo:D
10 3nzp:B 591 102 0.0579 0.0457 0.2647 1.9 3nzp:A
11 7aer:B 133 42 0.0343 0.1203 0.3810 2.5 7aer:C, 7bxo:H, 6m6v:B, 6m6v:C, 6m6v:D
12 6xyw:Ai 138 43 0.0322 0.1087 0.3488 4.7
13 7ko4:P 274 170 0.0837 0.1423 0.2294 5.0 7ko4:Q, 7ko4:W, 7ko4:X, 7ko5:P, 7ko5:Q, 7ko5:W, 7ko5:X, 7ko7:P, 7ko7:Q, 7ko7:W, 7ko7:X, 7kon:P, 7kon:Q, 7kon:W, 7kon:X, 7kor:P, 7kor:Q, 7kor:W, 7kor:X
14 4h6p:A 184 38 0.0322 0.0815 0.3947 5.3 4h6p:B, 4h6p:C, 4h6p:D, 4h6p:E, 4h6p:F, 4h6p:G, 4h6p:L, 4h6p:H, 4h6p:I, 4h6p:J, 4h6p:K, 4hs4:B, 4hs4:C, 4hs4:D, 4hs4:G, 4hs4:H, 3s2y:A, 3s2y:B, 3s2y:C, 3s2y:D
15 9ash:A 753 71 0.0451 0.0279 0.2958 6.6 9asi:A, 6xn3:A, 6xn4:A, 6xn5:A, 6xn7:A
16 7k5j:I 979 106 0.0622 0.0296 0.2736 7.4 7k5j:D, 7k5j:A, 7k5j:C, 7k5j:G, 7k5j:K, 7k5j:S, 5tr4:A, 5tr4:C
17 5l6i:A 1007 106 0.0622 0.0288 0.2736 7.9 3cmm:A, 3cmm:C, 5l6h:A, 5l6h:C, 5l6i:C, 5l6j:A, 5l6j:C, 4nnj:A, 4nnj:C, 6nya:A, 6nya:D, 6zhu:A, 6zhu:E, 6zhu:C, 6zhu:G, 7zh9:A
18 6vly:A 293 26 0.0193 0.0307 0.3462 8.4 6vly:B, 6vly:C, 6vly:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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