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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GEDMMHPLKVSLEDLYNGKTTKLQLSKNVLCSACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQQMQSVCSDCNGE
GEVINEKDRCKKCEGKKVIKEVKILEVHVDKGMKHGQRITFTGEADQAPGVEPGDIVLLLQEKEHEVFQRDGNDLHMTYK
IGLVEALCGFQFTFKHLDGRQIVVKYPPGKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKLSELE
DL

The query sequence (length=242) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7zhs:A 242 242 1.0000 1.0000 1.0000 0.0 7zhs:C, 7zhs:B, 7zhs:D, 7zhs:E, 7zhs:G, 7zhs:F, 7zhs:H, 7zhs:I, 7zhs:Q, 7zhs:M, 7zhs:U, 7zhs:Y, 7zhs:g, 7zhs:c, 7zhs:k, 7zhs:J, 7zhs:R, 7zhs:N, 7zhs:V, 7zhs:Z, 7zhs:h, 7zhs:d, 7zhs:l, 7zhs:K, 7zhs:S, 7zhs:O, 7zhs:W, 7zhs:a, 7zhs:i, 7zhs:e, 7zhs:m, 7zhs:L, 7zhs:T, 7zhs:P, 7zhs:X, 7zhs:b, 7zhs:j, 7zhs:f, 7zhs:n
2 1nlt:A 228 229 0.4669 0.4956 0.4934 2.37e-75
3 3agz:A 185 134 0.2562 0.3351 0.4627 6.35e-32 3agy:A, 3agy:B, 3agz:B
4 7ndx:A 154 128 0.2273 0.3571 0.4297 8.18e-24
5 7ndx:A 154 25 0.0496 0.0779 0.4800 0.89
6 2b26:A 157 124 0.1570 0.2420 0.3065 6.29e-15
7 6jzb:A 251 228 0.2355 0.2271 0.2500 8.64e-15
8 1exk:A 79 79 0.1157 0.3544 0.3544 0.002
9 6l4c:B 373 95 0.1074 0.0697 0.2737 0.22 6l4c:A
10 3lcz:A 53 30 0.0537 0.2453 0.4333 0.68 3lcz:B, 3lcz:C, 3lcz:D, 3ld0:A, 3ld0:B, 3ld0:C, 3ld0:D, 3ld0:E, 3ld0:F, 3ld0:G, 3ld0:H, 3ld0:I, 3ld0:J, 3ld0:K, 3ld0:L, 3ld0:M, 3ld0:N, 3ld0:O, 3ld0:P, 3ld0:Q, 3ld0:R, 3ld0:S, 3ld0:T, 3ld0:U, 3ld0:V, 3ld0:W, 3ld0:X, 3ld0:Y, 3ld0:Z, 3ld0:1, 3ld0:2, 3ld0:3, 3ld0:4, 3ld0:5, 3ld0:6, 3ld0:7, 3ld0:8, 3ld0:9, 3ld0:a, 3ld0:b, 3ld0:c, 3ld0:d, 3ld0:e, 3ld0:f, 3ld0:g, 3ld0:h, 3ld0:i, 3ld0:j, 3ld0:k, 3ld0:l, 3ld0:m
11 6ekc:B1 73 65 0.0744 0.2466 0.2769 3.4 6ekb:A, 6ekc:B2, 6ekc:B3, 6ekc:B4, 6ekc:B5, 6ekc:B6, 6ekc:B7, 6ekc:B8, 6ekc:D1, 6ekc:D2, 6ekc:D3, 6ekc:D4, 6ekc:D5, 6ekc:D6, 6ekc:D7, 6ekc:D8, 6ekc:F1, 6ekc:F2, 6ekc:F3, 6ekc:F4, 6ekc:F5, 6ekc:F6, 6ekc:F7, 6ekc:F8, 6ekc:H1, 6ekc:H2, 6ekc:H3, 6ekc:H4, 6ekc:H5, 6ekc:H6, 6ekc:H7, 6ekc:H8, 6ekc:J1, 6ekc:J2, 6ekc:J3, 6ekc:J4, 6ekc:J5, 6ekc:J6, 6ekc:J7, 6ekc:J8, 6ekc:L1, 6ekc:L2, 6ekc:L3, 6ekc:L4, 6ekc:L5, 6ekc:L6, 6ekc:L7, 6ekc:L8, 6ekc:N1, 6ekc:N2, 6ekc:N3, 6ekc:N4, 6ekc:N5, 6ekc:N6, 6ekc:N7, 6ekc:N8, 6ekc:P1, 6ekc:P2, 6ekc:P3, 6ekc:P4, 6ekc:P5, 6ekc:P6, 6ekc:P7, 6ekc:P8, 6ekc:R1, 6ekc:R2, 6ekc:R3, 6ekc:R4, 6ekc:R5, 6ekc:R6, 6ekc:R7, 6ekc:R8, 6ekc:T1, 6ekc:T2, 6ekc:T3, 6ekc:T4, 6ekc:T5, 6ekc:T6, 6ekc:T7, 6ekc:T8
12 2ctt:A 104 78 0.0950 0.2212 0.2949 3.8
13 7u09:H 227 77 0.0579 0.0617 0.1818 7.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218