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BioLiP
>protein
GEATTIWGVGADEAIDKGTPSKNDLQNMSADLAKNGFKGHQGVACSTVKDGNKDVYMIKFSLAGGSNDPGGSPCSDD

The query sequence (length=77) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1kvd:B 77 77 1.0000 1.0000 1.0000 2.62e-52
2 1xdn:A 265 63 0.2338 0.0679 0.2857 2.0
3 4b21:A 207 41 0.1429 0.0531 0.2683 2.8 4b22:A, 4b23:A, 4b24:A, 4hsb:A
4 7rwk:A 368 30 0.1558 0.0326 0.4000 4.2 7rwk:B
5 2xfg:B 172 65 0.2338 0.1047 0.2769 4.5
6 8bah:A 399 24 0.1169 0.0226 0.3750 4.8 8bah:B, 3t1i:A, 3t1i:B, 3t1i:C, 3t1i:D
7 5b0s:B 355 23 0.1299 0.0282 0.4348 6.3 5b0q:A, 5b0q:B, 5b0r:A, 5b0r:B, 5b0s:A
8 5bp9:A 237 40 0.1688 0.0549 0.3250 7.1
9 8gme:A 267 26 0.1558 0.0449 0.4615 8.3 2a1k:A, 2a1k:B, 2atq:B, 8gme:B, 1gpc:A
10 4ews:A 472 31 0.1688 0.0275 0.4194 9.6 4f2a:A, 2obd:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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