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BioLiP
>protein
GDVCFHCNRVIEGDVVSALNKAWCVNCFACSTCNTKLTLKNKFVEFDMKPVCKKCYEKFPLELKKRLKKL

The query sequence (length=70) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6mif:A 79 70 1.0000 0.8861 1.0000 1.04e-46
2 7lt9:B 131 70 1.0000 0.5344 1.0000 7.17e-46 7d2s:B, 7d2t:B, 7d2t:D, 7d2u:B, 1nyp:A, 1u5s:B
3 7lt9:B 131 57 0.2857 0.1527 0.3509 0.002 7d2s:B, 7d2t:B, 7d2t:D, 7d2u:B, 1nyp:A, 1u5s:B
4 1v6g:A 81 56 0.3286 0.2840 0.4107 2.13e-07
5 2dar:A 90 57 0.3286 0.2556 0.4035 2.57e-07
6 1x3h:A 80 55 0.2571 0.2250 0.3273 8.50e-06
7 7qb0:A 127 55 0.2857 0.1575 0.3636 3.05e-05
8 7qb0:A 127 53 0.2714 0.1496 0.3585 0.001
9 2cur:A 69 56 0.2429 0.2464 0.3036 6.94e-05
10 2dj7:A 80 50 0.2429 0.2125 0.3400 1.89e-04
11 1x61:A 72 47 0.2429 0.2361 0.3617 2.32e-04
12 2d8x:A 70 55 0.2429 0.2429 0.3091 6.09e-04
13 6u4m:A 65 58 0.2714 0.2923 0.3276 0.001 6u4n:B
14 2cuq:A 80 56 0.2000 0.1750 0.2500 0.010
15 1x64:A 89 47 0.2571 0.2022 0.3830 0.15
16 1b8t:A 192 58 0.2429 0.0885 0.2931 0.16 1ctl:A
17 1cxx:A 59 51 0.2286 0.2712 0.3137 0.20 1ibi:A, 1qli:A
18 6cme:A 154 60 0.2857 0.1299 0.3333 0.25 6cme:B, 3mmk:A, 3mmk:B
19 2xqn:T 125 56 0.2714 0.1520 0.3393 0.27 2iyb:E, 2iyb:F, 2iyb:G, 2iyb:H
20 1x4k:A 72 39 0.1857 0.1806 0.3333 0.69
21 2mbv:A 96 44 0.1857 0.1354 0.2955 0.75
22 2o13:A 58 56 0.2571 0.3103 0.3214 0.84
23 2d8z:A 70 53 0.2000 0.2000 0.2642 0.89
24 2jtn:A 182 44 0.2143 0.0824 0.3409 1.1
25 2jtn:A 182 37 0.1429 0.0549 0.2703 6.3
26 7p0h:A 411 38 0.1714 0.0292 0.3158 1.3 7p0h:B, 7p0h:C, 7p0h:D
27 2rgt:B 154 44 0.2143 0.0974 0.3409 1.5 2rgt:A
28 2rgt:B 154 37 0.1429 0.0649 0.2703 6.9 2rgt:A
29 2dfy:X 158 53 0.2000 0.0886 0.2642 1.5 2dfy:C, 1rut:X
30 2d8y:A 91 58 0.2143 0.1648 0.2586 1.9
31 2dlo:A 81 34 0.1571 0.1358 0.3235 1.9
32 1wyh:A 72 38 0.1857 0.1806 0.3421 1.9
33 2cup:A 101 54 0.2714 0.1881 0.3519 3.0
34 7aih:Ax 167 66 0.2429 0.1018 0.2576 4.0 7am2:Ax, 7ane:Ax
35 1iri:A 557 18 0.1286 0.0162 0.5000 6.1 1dqr:A, 1dqr:B, 1g98:A, 1g98:B, 1gzv:A, 1hox:A, 1hox:B, 1iri:B, 1iri:C, 1iri:D, 1koj:A, 1koj:B, 1nuh:A, 1xtb:A, 1xtb:B, 6xuh:A, 6xuh:B, 6xuh:C, 6xuh:D, 6xui:A, 6xui:B, 6xui:C, 6xui:D
36 2o4u:X 331 37 0.1857 0.0393 0.3514 6.1 2poq:X
37 4hea:3 756 36 0.1857 0.0172 0.3611 6.2 2fug:3, 2fug:C, 2fug:L, 2fug:U, 4hea:D, 6i0d:3, 6i0d:D, 6i1p:3, 6i1p:D, 3i9v:3, 3i9v:C, 3iam:3, 3iam:C, 3ias:3, 3ias:C, 3ias:L, 3ias:U, 3m9s:3, 3m9s:C, 6q8o:3, 6q8o:D, 6q8w:3, 6q8w:D, 6q8x:3, 6q8x:D, 6y11:3, 6y11:D, 2ybb:3, 6ziy:3, 6zjl:3, 6zjn:3, 6zjy:3
38 2lxd:A 123 35 0.1000 0.0569 0.2000 6.2 2l6y:B, 2l6z:C
39 4b0a:A 237 29 0.1286 0.0380 0.3103 6.7
40 2miu:A 98 58 0.2429 0.1735 0.2931 8.5
41 3ab3:A 322 26 0.1286 0.0280 0.3462 8.8 3ab3:C, 3cx6:A, 3cx7:A, 3cx8:A, 1zcb:A
42 1x62:A 79 46 0.1857 0.1646 0.2826 9.3
43 7w16:A 264 59 0.2143 0.0568 0.2542 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218