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BioLiP
>protein
GDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI
QFSNHKELKTDSSPNQAR

The query sequence (length=98) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2n3o:A 123 98 1.0000 0.7967 1.0000 2.31e-70 2ad9:A, 8bwf:A, 8bwf:D, 8bwf:B, 8bwf:C, 8bwf:E, 8bwf:J, 8bwf:F, 8bwf:G, 8bwf:H, 8bwf:I, 8bwf:K, 8bwf:L, 8bwf:N, 8bwf:O, 8bwf:P
2 6so9:A 112 81 0.4082 0.3571 0.4938 3.91e-20
3 2mqo:A 105 89 0.2245 0.2095 0.2472 1.29e-06
4 2x1f:A 94 61 0.2143 0.2234 0.3443 7.07e-05 2km8:B, 2x1a:A
5 7uj1:B 270 68 0.2041 0.0741 0.2941 0.003 7pu5:B, 7pu5:D, 7pu5:H, 7pu5:J, 7pu5:L, 7sp0:B, 7uj1:A
6 5ifm:C 256 68 0.2143 0.0820 0.3088 0.017 5ifm:A
7 5o1y:A 163 59 0.1531 0.0920 0.2542 0.029 5o1z:A, 5o20:A
8 6gd2:A 84 60 0.2245 0.2619 0.3667 0.035 6g2k:A, 6g2k:B, 6gc5:A, 6gc5:B, 6gc5:C, 6gc5:D, 6gd2:B, 6gd3:B, 6gd3:C
9 7dvq:Y 140 58 0.1531 0.1071 0.2586 0.046 8i0p:Y, 8i0r:Y
10 7qde:B 169 47 0.1633 0.0947 0.3404 0.048 7qdd:B
11 6m75:A 167 81 0.1837 0.1078 0.2222 0.13
12 6m75:A 167 59 0.1327 0.0778 0.2203 1.5
13 8pv1:CI 152 64 0.2143 0.1382 0.3281 0.16 8i9p:CI, 8i9r:CI, 8i9t:CI, 8i9v:CI, 8i9w:CI, 8i9x:CI, 8i9y:CI, 8i9z:CI, 8ia0:CI, 8pv3:CI, 8pv4:CI, 8pv7:CI, 8pvk:CI
14 4hs8:H 225 50 0.1633 0.0711 0.3200 0.28
15 6n7p:A 186 38 0.1327 0.0699 0.3421 0.57 6n7r:A, 6n7x:A, 7oqc:B, 7oqe:B, 8w2o:A, 5zwn:Q
16 8gho:A 122 36 0.1224 0.0984 0.3333 1.1 8gho:H
17 6g90:B 193 38 0.1327 0.0674 0.3421 1.1
18 4dgv:H 226 48 0.1531 0.0664 0.3125 3.3 4dgy:H, 5kzp:H, 5kzp:E, 5kzp:F, 5kzp:G
19 7yue:A 225 52 0.1429 0.0622 0.2692 3.5 8h3c:D, 8h3c:B
20 8dhl:B 853 60 0.1735 0.0199 0.2833 4.2 8dhl:A
21 1nc2:B 219 27 0.1122 0.0502 0.4074 4.2 1nc2:D, 1nc4:B, 1nc4:D
22 1mdx:A 366 60 0.1429 0.0383 0.2333 4.4 1mdo:A, 1mdz:A, 4oca:A
23 1q72:H 220 36 0.1224 0.0545 0.3333 5.4 7lki:DDD, 1qyg:H, 1riu:H, 1riv:H
24 4qqb:A 169 77 0.1531 0.0888 0.1948 6.1 1b7f:A, 1b7f:B, 4qqb:B
25 6n7r:C 133 35 0.1122 0.0827 0.3143 7.4 6n7p:C, 6n7x:C, 7oqc:A, 7oqe:A, 8w2o:C, 5zwn:S
26 3qnz:B 208 31 0.1224 0.0577 0.3871 7.5
27 1r0a:H 225 19 0.1020 0.0444 0.5263 8.6
28 7abi:P 237 50 0.1224 0.0506 0.2400 9.4 7aav:P, 7abg:P

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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