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BioLiP
>protein
GDPPATVYRYDSRPPEDVFQNGFTAWGNNDNVLEHLTGRSSQVGSSNSAFVSTSSSRRYTEVYLEHRMQEAVEAERAGRG
TGHFIGYIYEVRADNNFYGAASSYFEYVDTYGDNAGRILAGALATYQSEYLAHRRIPPENIRRVTRVYHNGITGETTTTE
YSNARYVSQQTRANPNPYTSR

The query sequence (length=181) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7skk:D 181 180 0.9945 0.9945 1.0000 1.23e-131 7ski:A, 7ski:B, 7skk:A, 7skk:B, 7skk:C, 7sky:B, 7sky:A, 7sky:C, 7sky:D, 7sne:A, 7sne:B, 7sne:C, 7sne:D, 7u6z:B, 7u6z:A
2 4z9d:C 175 175 0.3039 0.3143 0.3143 6.63e-15 4z9d:A, 4z9d:B, 4z9d:D
3 8qre:A 237 63 0.1105 0.0844 0.3175 2.2 2a5f:B
4 5h6j:B 222 59 0.0939 0.0766 0.2881 2.6 5h6j:A, 5h6l:A, 5h6l:B
5 7aor:aa 1558 69 0.1160 0.0135 0.3043 2.8
6 2eqd:A 510 76 0.1326 0.0471 0.3158 4.3 2e0p:A, 2e4t:A, 2eex:A, 2ej1:A, 2eo7:A
7 5zj5:A 160 21 0.0663 0.0750 0.5714 5.2 5zj5:B
8 1aym:1 285 58 0.0884 0.0561 0.2759 7.2 1ayn:1, 1c8m:1, 1ncr:A, 1nd2:A, 1nd3:A, 1qju:1, 1qjx:1, 1qjy:1
9 3is5:D 236 23 0.0497 0.0381 0.3913 9.0
10 3is5:F 266 23 0.0497 0.0338 0.3913 10.0 3is5:A, 3is5:B, 3is5:C, 3is5:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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