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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GDPNFWLQVQESVTVQEGLCVLVPCTFFHPIPYYDKNSPVHGYWFREGAIISRDSPVATNKLDQEVQEETQGRFRLLGDP
SRNNCSLSIVDARRRDNGSYFFRMERGSTKYSYKSPQLSVHVTDLT

The query sequence (length=126) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5j06:B 215 123 0.9603 0.5628 0.9837 2.26e-88 7aw6:A, 7aw6:B, 6d49:A, 6d49:B, 6d4a:A, 6d4a:B, 5j06:D, 5j0b:A, 5j0b:B, 5j0b:C
2 2n7b:A 145 129 0.6429 0.5586 0.6279 3.67e-49 7qui:B, 7qui:A
3 2hrl:A 116 117 0.5476 0.5948 0.5897 2.59e-43 2df3:A, 2g5r:A, 1o7s:A
4 2zg3:A 210 120 0.5635 0.3381 0.5917 8.13e-42 2zg1:A
5 5lfu:A 487 98 0.2778 0.0719 0.3571 1.29e-10 5lf5:A, 5lfr:A, 5lfr:B, 5lfv:B, 5lfv:A
6 2bve:A 119 99 0.2063 0.2185 0.2626 1.82e-05 2bve:B, 1od7:A, 1od9:A, 1oda:A, 1qfo:A, 1qfo:B, 1qfo:C, 1url:A
7 5vkm:A 306 113 0.2540 0.1046 0.2832 6.78e-05
8 7phr:A 243 111 0.2460 0.1276 0.2793 0.013 4en3:A, 4mji:D, 4mji:I, 7t2b:D, 7t2b:I, 7t2b:N, 7t2b:S, 1ymm:D
9 1d9k:A 110 94 0.1746 0.2000 0.2340 0.061 1d9k:E
10 5tje:G 112 110 0.2222 0.2500 0.2545 0.10
11 3eyf:B 218 64 0.1429 0.0826 0.2812 0.11 3eyf:D
12 4g8g:D 204 98 0.1984 0.1225 0.2551 0.21 4g9f:D
13 1u3h:A 110 108 0.2222 0.2545 0.2593 0.30 1u3h:E
14 1kj2:A 111 98 0.2063 0.2342 0.2653 0.31
15 8skj:A 120 97 0.1825 0.1917 0.2371 0.33 8skj:B, 8skj:D, 8skj:G
16 7te8:C 119 83 0.1746 0.1849 0.2651 0.44 7te8:D
17 5nl9:A 146 63 0.1905 0.1644 0.3810 0.48 5nl9:B
18 4hih:B 203 73 0.1349 0.0837 0.2329 0.58 4hih:D, 4hii:B, 4hii:D, 4hij:B
19 3mj9:A 229 63 0.1587 0.0873 0.3175 0.58
20 3mj9:A 229 46 0.1111 0.0611 0.3043 5.2
21 7na5:D 180 113 0.2381 0.1667 0.2655 0.63
22 5ock:H 220 42 0.1032 0.0591 0.3095 0.66 5ocx:H, 5ocy:H, 6zjg:HHH
23 5t33:H 223 73 0.1349 0.0762 0.2329 0.73
24 5vh4:A 220 46 0.1111 0.0636 0.3043 0.80
25 5f7h:B 113 42 0.1032 0.1150 0.3095 0.89 5f7h:A, 5f7h:C, 5f7h:D, 5f7h:E, 5f7h:F
26 8vev:H 214 37 0.0952 0.0561 0.3243 0.92 8vev:C
27 5ivx:E 194 98 0.2063 0.1340 0.2653 1.1 3c6l:A, 3c6l:E
28 6pdu:H 216 61 0.1270 0.0741 0.2623 1.5
29 6j15:D 106 29 0.0952 0.1132 0.4138 1.5
30 7te8:A 120 61 0.1349 0.1417 0.2787 1.5 7te8:B
31 1bd2:D 190 106 0.1825 0.1211 0.2170 1.5
32 8q6r:A 119 88 0.1667 0.1765 0.2386 1.6
33 8yb6:G 377 37 0.1111 0.0371 0.3784 1.7 8yb6:D, 8yb6:E, 8yb6:F, 8yb6:H, 8yha:E, 8yha:F, 8yha:G, 8yha:H
34 8yha:D 355 37 0.1111 0.0394 0.3784 1.7
35 6d11:C 221 53 0.1111 0.0633 0.2642 1.8 6d11:A
36 6jjp:F 118 29 0.0952 0.1017 0.4138 1.9 8as0:A, 8as0:F, 8as0:I, 8as0:L, 8as0:O, 8as0:R, 8as0:X, 8as0:Y, 7cu5:Q, 6j15:C, 6jbt:F, 6jjp:C, 6umt:A, 5wt9:G
37 1cle:A 534 33 0.1190 0.0281 0.4545 1.9 1cle:B, 1llf:A, 1llf:B
38 5wdf:H 209 37 0.0952 0.0574 0.3243 1.9 5wdf:A
39 7lfd:H 224 45 0.1032 0.0580 0.2889 2.3
40 6ju0:I 213 42 0.1032 0.0610 0.3095 2.4 6ju0:H, 6ju0:J, 6ju0:K, 6jwc:H, 7lki:AAA
41 3iet:D 211 34 0.0952 0.0569 0.3529 2.6 3iet:B
42 9g13:E 127 103 0.2063 0.2047 0.2524 2.6 9g13:A, 9g13:C, 9g13:G
43 1m7d:B 220 68 0.1349 0.0773 0.2500 2.7 1m7i:B, 1pz5:B
44 8yb6:I 268 37 0.1111 0.0522 0.3784 2.9 8yha:I
45 1mex:H 211 99 0.1587 0.0948 0.2020 3.1 1a0q:H
46 5u3o:H 235 58 0.1349 0.0723 0.2931 3.2 5u3k:H, 5u3k:A, 5u3l:H, 5u3l:A
47 8axh:H 227 106 0.2063 0.1145 0.2453 3.2 5a2i:H, 5a2j:H, 5a2k:H, 5a2l:H, 1a6v:L, 1a6v:M, 1a6v:N, 1a6w:L, 2bjm:L, 1dl7:L, 6frj:H, 5fxc:H, 6fzq:H, 6fzr:H, 5n7b:H, 1oar:L, 1oar:M, 1oar:N, 1oar:O, 1oau:M, 1oau:O, 1oau:L, 1oau:N, 1oay:L, 1oay:N, 5owp:H, 1p4b:L, 6tgg:H
48 7t76:H 136 93 0.1825 0.1691 0.2473 3.4
49 6uoe:H 225 68 0.1349 0.0756 0.2500 3.7
50 6df1:H 220 43 0.0952 0.0545 0.2791 4.3 6df2:H, 6df2:B
51 5jzi:D 207 96 0.1984 0.1208 0.2604 4.8 8gom:D, 8gon:D, 5jhd:D, 5jhd:I, 5jzi:I, 5yxn:A, 5yxu:A
52 7kv3:AAA 467 50 0.1111 0.0300 0.2800 5.9
53 7r0j:D 229 39 0.0873 0.0480 0.2821 5.9 8i0n:M, 8i0n:L, 8i0q:M, 8i0q:L, 8i0z:E, 8i0z:L, 8i0z:N, 8i10:E, 8j8r:E, 8j8z:L, 8j8z:M, 6ni2:L, 8vr9:D, 8vra:D, 8vrb:D
54 1frg:H 220 41 0.1032 0.0591 0.3171 6.0 1him:L, 1him:M, 1hin:H, 1ifh:H
55 5u3j:H 235 43 0.1032 0.0553 0.3023 6.0
56 8cx4:D 206 108 0.1984 0.1214 0.2315 6.1 2bnq:D, 2bnr:D, 5bs0:D, 5eu6:D, 2f53:D, 2f54:D, 2f54:K, 8f5a:C, 7n2o:D, 7n2p:D, 7n2q:D, 7n2q:E, 2p5e:D, 2p5w:D, 6px6:D, 2pye:D, 6q3s:D, 8rym:D, 8ryn:D, 8ryo:D, 8ryp:D, 8ryq:D, 8ryq:I, 3vxr:D, 3vxs:D, 6zkw:D, 6zkx:D, 6zky:D, 6zkz:D
57 1sbs:H 222 48 0.1032 0.0586 0.2708 6.6 5b6f:B, 5b6f:D, 5b6f:F, 5b6f:H, 6kx1:A, 1sm3:H
58 7uii:a 182 32 0.1032 0.0714 0.4062 6.6
59 1a8h:A 500 22 0.0794 0.0200 0.4545 6.7 2d54:A, 2d5b:A, 3vu8:A, 1woy:A
60 1qkz:H 219 34 0.0794 0.0457 0.2941 7.4
61 3nzh:H 222 34 0.0873 0.0495 0.3235 8.0 6e4y:H, 6e4z:H, 6mv5:H, 6obd:B, 6obd:H, 5vh4:H
62 6vi1:B 232 34 0.0794 0.0431 0.2941 8.1 9aur:H, 9aus:H, 9aus:A, 6b14:H, 6b3k:H, 6b9y:B, 6bae:B, 6bah:B, 9cmi:H, 8d29:A, 8d29:H, 8d29:D, 8d29:G, 6db8:H, 6db9:H, 8dk7:B, 8dk7:D, 9dn4:A, 9dn4:D, 8dp3:H, 4ioi:B, 3ivk:H, 3ivk:A, 4kzd:H, 4kze:H, 7mlx:H, 6mwn:C, 6mwn:H, 3p0v:H, 3p0v:I, 7pgb:a, 7pgb:X, 7pgb:i, 7pgb:m, 7pgb:U, 4q9q:H, 4q9r:H, 2r8s:H, 8sh5:H, 6snh:H, 6sni:H, 7stf:H, 7szu:H, 8t29:A, 8t2a:A, 8t2b:A, 8t2o:A, 7u0y:H, 8u4v:H, 5u5f:B, 5u5m:B, 8u5b:H, 5u6a:B, 6u8d:H, 6u8k:H, 6u8k:D, 6u8k:F, 8uiw:H, 8uiw:A, 6uj9:H, 8uta:H, 8uta:A, 6vi1:E, 6vi1:F, 6vi1:H, 6vi1:J, 6vi1:L, 8vm8:H, 8vm9:H, 8vm9:A, 8vma:A, 8vma:H, 8vmb:H, 6w51:O, 6x5m:H, 6x5m:h, 6x5n:H, 6x5n:h, 4xgz:A, 4xgz:C, 4xgz:G, 4xgz:H, 4xgz:J, 4xgz:M, 4xgz:O, 4xgz:Q, 4xgz:S, 4xgz:U, 4xgz:W, 4xh2:A, 4xh2:C, 4xh2:E, 4xh2:G, 4xh2:H, 4xh2:J, 6xjq:H, 6xjq:C, 6xjw:C, 6xjw:H, 6xjy:H, 6xjy:C, 6xjz:H, 6xjz:C
63 3eyv:H 219 47 0.1190 0.0685 0.3191 8.7 1s3k:H
64 5jph:B 144 51 0.1270 0.1111 0.3137 9.2 5jph:A, 5jph:C
65 6vrn:D 188 94 0.1746 0.1170 0.2340 9.2
66 7rm4:E 200 98 0.1508 0.0950 0.1939 9.2 7rm4:J, 7rm4:O, 7rm4:T
67 6axl:A 218 93 0.2143 0.1239 0.2903 9.8 6axl:D
68 8fbw:C 231 34 0.0873 0.0476 0.3235 9.9 8fbw:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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