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BioLiP
>protein
GDLYEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEFNGLHMS

The query sequence (length=58) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6v2d:G 64 58 1.0000 0.9062 1.0000 6.06e-39 5jjz:A, 7slw:A, 7slw:B, 7slw:C, 7slw:D, 7slw:E, 7slw:F, 8sp6:A, 8sp6:B, 8sp6:C, 8sp6:D, 8sp6:E, 8sp6:F, 6v2d:I, 6v2d:K, 6v2d:A, 6v2d:C, 6v2d:E, 6v2h:A, 6v2h:C, 6v2h:E, 6v2h:G, 6v2h:I, 6v2h:K, 6v3n:A, 6v3n:B, 6v8w:A, 6v8w:B, 6v8w:C, 6v8w:D, 6v8w:E, 6v8w:F, 6v8w:G, 6v8w:H, 6v8w:I, 6v8w:J, 6v8w:K, 6v8w:L, 6v8w:M, 6v8w:N, 6v8w:O, 6v8w:P, 6v8w:Q, 6v8w:R, 6v8w:S, 6v8w:T, 6v8w:U, 6v8w:V, 6v8w:W, 6v8w:X, 6v8w:Y, 6v8w:Z
2 7n27:A 57 55 0.7069 0.7193 0.7455 1.77e-25 7n27:D, 7n27:B, 7n27:C, 7n27:E, 7n27:F
3 6v41:AAA 61 50 0.5000 0.4754 0.5800 8.31e-19
4 3qo2:A 61 51 0.4828 0.4590 0.5490 1.18e-12 7m5u:A, 3qo2:D, 3qo2:B, 3qo2:C, 3r93:A, 3r93:D, 3r93:B, 3r93:C, 3svm:A, 6v2s:A, 6v2s:B
5 6asz:A 53 51 0.3966 0.4340 0.4510 1.00e-10 6at0:A, 1kna:A, 1kne:A, 6mha:A, 1q3l:A
6 2rsn:A 75 46 0.3966 0.3067 0.5000 7.48e-10 3g7l:A
7 2rvn:A 83 49 0.4138 0.2892 0.4898 1.46e-09
8 3tzd:A 58 49 0.3621 0.3621 0.4286 8.12e-09 3dm1:A, 3dm1:C, 3dm1:G, 3dm1:E, 2l11:A
9 8uxq:A 170 47 0.3966 0.1353 0.4894 2.03e-08 3fdt:A
10 1guw:A 73 40 0.3448 0.2740 0.5000 5.34e-08 6d07:A, 6d07:B, 6d08:A, 6d08:B
11 7vyw:A 47 42 0.3621 0.4468 0.5000 1.41e-07
12 5ejw:A 80 42 0.3621 0.2625 0.5000 2.45e-07 5epj:A, 2kvm:A, 2l12:A, 2l1b:A, 4mn3:A, 8sii:A, 8sii:B, 6v2r:A, 4x3k:A, 4x3k:B, 4x3s:B, 4x3s:A, 4x3t:A, 4x3t:B, 4x3t:C, 4x3t:D, 4x3t:E, 4x3t:F, 4x3u:A, 4x3u:B
13 5epk:A 54 42 0.3103 0.3333 0.4286 5.04e-07 3h91:A, 3h91:B
14 3gv6:A 56 41 0.3103 0.3214 0.4390 5.43e-07 3i90:A, 3i90:B
15 5eq0:A 55 34 0.2759 0.2909 0.4706 6.34e-07 3i91:A
16 5epl:B 58 47 0.3103 0.3103 0.3830 1.30e-06 5epl:A
17 1pfb:A 55 41 0.3276 0.3455 0.4634 2.66e-06 1pdq:A
18 4u68:A 64 49 0.2759 0.2500 0.3265 6.18e-06 4quf:A, 4quf:B, 4quf:C, 4quf:D, 4quf:E, 4quf:F, 4u68:B, 4u68:C
19 4fsx:A 680 31 0.2586 0.0221 0.4839 1.98e-05 4fsx:B, 4ft2:B, 4ft2:A
20 7ubu:A 708 31 0.2586 0.0212 0.4839 2.35e-05 4ft4:A, 4ft4:B
21 7vrf:A 61 51 0.3103 0.2951 0.3529 6.13e-05 7vrf:B
22 2b2w:A 177 30 0.2586 0.0847 0.5000 0.099 5afw:A, 2b2t:A, 2b2u:A, 2b2v:A, 4nw2:A, 4nw2:C, 4o42:A
23 6guu:B 204 32 0.2241 0.0637 0.4062 0.12 6guu:A
24 6ryr:W 708 34 0.2069 0.0169 0.3529 0.16 2l75:A, 1mm2:A, 6q3m:D, 6ryu:W, 6ryu:V
25 6q3m:C 219 34 0.2069 0.0548 0.3529 0.24 6q3m:A, 6q3m:B
26 3ui2:A 234 38 0.2414 0.0598 0.3684 0.40 3dep:A, 2hug:A
27 3ui2:A 234 29 0.2586 0.0641 0.5172 1.1 3dep:A, 2hug:A
28 6s47:Bi 952 50 0.2414 0.0147 0.2800 0.54
29 7ef1:A 148 36 0.2069 0.0811 0.3333 0.55 7eez:A, 7ef0:A, 7ef0:B, 7ef1:B, 7ef2:A, 7ef2:B, 7ef3:A, 7ef3:B
30 7ukh:A 203 50 0.3103 0.0887 0.3600 1.5 7ukh:B, 7ukh:C, 7ukh:D
31 3oa6:A 84 43 0.2586 0.1786 0.3488 1.5 3oa6:B
32 5e4w:C 105 29 0.2586 0.1429 0.5172 1.7 5e4w:D, 5e4x:A
33 6g0l:M 855 35 0.1897 0.0129 0.3143 2.0 7nkx:W, 5o9g:W
34 9gd1:W 849 35 0.1897 0.0130 0.3143 2.0
35 9gd1:W 849 38 0.2069 0.0141 0.3158 6.7
36 7tn2:W 895 35 0.1897 0.0123 0.3143 2.1 9gd2:W, 9gd3:W
37 7tn2:W 895 32 0.1897 0.0123 0.3438 5.4 9gd2:W, 9gd3:W
38 6ftx:W 878 35 0.1897 0.0125 0.3143 2.1 6g0l:W, 5j70:A, 5j70:B, 3mwy:W, 3ted:A
39 7b2l:A 147 37 0.2241 0.0884 0.3514 2.2 7b2l:C, 7b2l:F, 7b2l:H, 7b2l:K, 7b2l:M, 7b2l:P, 7b2l:R
40 1m1j:C 390 25 0.1724 0.0256 0.4000 3.1 1m1j:F
41 7e8e:D 459 63 0.3276 0.0414 0.3016 4.1 7e87:B, 7e87:A, 7e87:C, 7e87:D, 7e8e:B, 1nn7:A, 7ukg:A, 7ukg:B, 7ukg:C, 7ukg:D
42 5on7:A 147 36 0.2069 0.0816 0.3333 5.4
43 8fky:BC 338 48 0.2586 0.0444 0.3125 5.8
44 5yq0:C 304 29 0.1552 0.0296 0.3103 7.5 5yq0:G
45 4b2g:B 572 26 0.1897 0.0192 0.4231 8.2 4b2g:A
46 8wmm:B 1212 46 0.2414 0.0116 0.3043 8.4 8iyq:A, 8wmh:A, 8wmm:A, 8wmn:A, 8wmn:B, 8wr4:A
47 8wr4:B 1442 46 0.2414 0.0097 0.3043 8.9
48 6hf2:A 325 29 0.1552 0.0277 0.3103 9.7 6hf4:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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