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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GDFVVGMVTDSGDIDDKSFNQQVWEGISRFAQENNAKCKYVTASTDAEYVPSLSAFADENMGLVVACGSFLVEAVIETSA
RFPKQKFLVIDAVVQDRDNVVSAVFGQNEGSFLVGVAAALKAKEAGKSAVGFIVGMELGMMPLFEAGFEAGVKAVDPDIQ
VVVEVANTFSDPQKGQALAAKLYDSGVNVIFQVAGGTGNGVIKEARDRRLNGQDVWVIGVDRDQYMDGVYDGSKSVVLTS
MVKRADVAAERISKMAYDGSFPGGQSIMFGLEDKAVGIPEENPNLSSAVMEKIRSFEEKIVSKEIVVPVRSARMMN

The query sequence (length=316) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2fqw:A 316 316 1.0000 1.0000 1.0000 0.0 2fqx:A, 2fqy:A
2 6y9u:A 332 315 0.3892 0.3705 0.3905 2.39e-59 6y9u:B, 6y9u:C, 6y9u:D, 6ya3:C, 6ya3:A, 6ya3:B, 6ya3:D, 6ya4:C, 6ya4:A, 6ya4:B, 6ya4:D, 6yab:CCC, 6yab:AAA, 6yab:BBB, 6yab:DDD, 6yag:C, 6yag:A, 6yag:B, 6yag:D
3 7x0r:B 313 310 0.3513 0.3546 0.3581 1.87e-54 7x0r:A
4 6shu:A 316 293 0.2785 0.2785 0.3003 1.90e-27
5 4pev:A 370 266 0.2532 0.2162 0.3008 4.24e-20 4pev:B, 4pev:C
6 4iil:A 314 262 0.2247 0.2261 0.2710 5.43e-20
7 3s99:A 330 173 0.1551 0.1485 0.2832 7.72e-05
8 6pii:A 336 91 0.0886 0.0833 0.3077 0.018 6pi5:A, 6pi5:B, 6pi5:C, 6pi5:D, 6pi6:A, 6pi6:B, 6pi6:C, 6pi6:D, 6pii:B, 6pii:C, 6pii:D
9 1c53:A 79 20 0.0348 0.1392 0.5500 2.7
10 6qu3:A 464 95 0.0696 0.0474 0.2316 3.3 3f5m:A, 3f5m:B, 3f5m:C, 3f5m:D, 6qu3:B, 6qu3:C, 6qu3:D, 6qu4:A, 6qu4:B, 6qu4:C, 6qu4:D, 6qu5:A, 6qu5:B, 6sy7:A, 6sy7:B, 6sy7:C, 6sy7:D, 6sy7:E, 6sy7:F, 6sy7:G, 6sy7:H
11 4amq:A 341 47 0.0443 0.0411 0.2979 5.0
12 4jnd:A 408 35 0.0380 0.0294 0.3429 5.2
13 1bxr:A 1073 123 0.0823 0.0242 0.2114 7.7 1a9x:A, 1a9x:C, 1a9x:E, 1a9x:G, 1bxr:C, 1bxr:E, 1bxr:G, 1c30:A, 1c30:C, 1c30:E, 1c30:G, 1c3o:A, 1c3o:C, 1c3o:E, 1c3o:G, 1ce8:A, 1ce8:C, 1ce8:E, 1ce8:G, 1cs0:A, 1cs0:C, 1cs0:E, 1cs0:G, 1jdb:B, 1jdb:E, 1jdb:H, 1jdb:K, 1kee:A, 1kee:C, 1kee:E, 1kee:G, 1m6v:A, 1m6v:C, 1m6v:E, 1m6v:G, 1t36:A, 1t36:C, 1t36:E, 1t36:G
14 8p7e:A 309 29 0.0411 0.0421 0.4483 8.8 8p7e:B, 8p8f:A, 8p8f:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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