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BioLiP
>protein
GDFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIRAKFTEYLNRAEQLKKHLESEEANA

The query sequence (length=78) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5fvl:A 83 78 1.0000 0.9398 1.0000 3.41e-52 5fvk:A, 5fvk:B, 5fvl:B, 4niq:A, 4niq:B
2 4u7y:A 83 76 0.4487 0.4217 0.4605 2.19e-13 2jqk:A
3 2k3w:A 73 69 0.4231 0.4521 0.4783 3.00e-13 2jq9:A
4 2ymb:D 231 74 0.2949 0.0996 0.3108 3.82e-09 4a5x:A, 4a5x:B, 2ymb:C
5 1chm:A 401 33 0.1538 0.0299 0.3636 1.8 1chm:B
6 6gne:B 494 28 0.1667 0.0263 0.4643 3.7 6gne:A
7 6enz:A 487 42 0.1667 0.0267 0.3095 4.1 6enz:B
8 6dql:A 227 50 0.1923 0.0661 0.3000 5.6
9 4v7e:BY 138 63 0.2436 0.1377 0.3016 5.6 8ip8:ba, 8ip9:ba, 8ipa:ba, 8ipb:ba, 8jiw:BY, 4v3p:SU
10 6p2l:A 685 59 0.2308 0.0263 0.3051 7.1
11 5mul:A 378 49 0.2051 0.0423 0.3265 7.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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