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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GCGELVWVGEPVTLRTAETITGKYGVWMRDPKPVYPYTQETTWRIDTVGTDVRQVFEYDLISQFMQGYPSKVHILPRPLE
STGAVVYNGSLYFQGAGSRTVIRYDLKTETVKAEKEIPGAGYHGQYPYSWGGYTDIDLAVDENGLWVIYSTNQAKGNIVL
SKLNPETLEVEQTWETNIRKQSVANAFIICGTLYTVSSYTSADATVNFAYDTNTGTSKYLDIPFKNRYKYNSMIDYNPLE
RKLFAWDNGHMVTYDIKLSK

The query sequence (length=260) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6ou1:A 260 260 1.0000 1.0000 1.0000 0.0 8frr:A, 6ou1:B, 7sib:A, 7sij:A, 7sjt:A, 7sju:A, 7sjv:A, 7sjw:A, 7skd:A, 7ske:A, 7skf:A, 7skg:A, 7t8d:A, 4wxq:A, 4wxs:A, 4wxu:A
2 6nax:A 259 258 0.8423 0.8456 0.8488 2.93e-167 6nax:B
3 6qm3:A 268 258 0.4654 0.4515 0.4690 4.20e-81 6qhj:A, 6qm3:B, 4xat:A
4 5ftt:G 368 244 0.3846 0.2717 0.4098 8.83e-61 5afb:A, 5cmn:E, 5cmn:F, 5cmn:G, 5cmn:H, 5ftt:C, 5ftt:D, 5ftt:H, 5ftu:C, 5ftu:D, 5ftu:G, 5ftu:H, 5ftu:K, 5ftu:L, 4rmk:A, 4rml:A, 4yeb:A
5 6ska:D 347 259 0.3692 0.2767 0.3707 1.96e-52 2jxa:A
6 6k61:B 740 49 0.0615 0.0216 0.3265 0.58 6jeo:aB, 6jeo:bB, 6jeo:cB, 6jeo:dB, 6k61:b, 6tcl:B1, 6tcl:B2, 6tcl:B, 6tcl:BB, 7y3f:B
7 6igz:B 733 49 0.0615 0.0218 0.3265 0.86
8 7mxb:A 672 110 0.1269 0.0491 0.3000 1.1 7mxb:B, 7mxj:A, 7mxk:A
9 8dos:A 247 132 0.1038 0.1093 0.2045 1.7 8dos:B
10 7s3d:B 742 49 0.0577 0.0202 0.3061 1.8 7s3d:H, 7s3d:b
11 4ruw:A 386 78 0.0885 0.0596 0.2949 3.5
12 7sh1:A 626 58 0.0577 0.0240 0.2586 4.0 7sh1:B
13 7qco:B 734 49 0.0538 0.0191 0.2857 4.2 7qco:G, 7qco:g, 7qco:b
14 3flp:A 217 32 0.0346 0.0415 0.2812 7.8 3flp:B, 3flp:C, 3flp:D, 3flp:E, 3flp:F, 3flp:G, 3flp:H, 3flp:I, 3flp:J, 3flp:K, 3flp:L, 3flp:M, 3flp:N, 3flr:A, 3flr:B, 3flt:A, 3flt:B
15 7lx0:H 739 49 0.0538 0.0189 0.2857 8.2 7lx0:b, 7lx0:B, 6pnj:H, 6pnj:B, 6pnj:b
16 7wfd:AB 734 49 0.0500 0.0177 0.2653 8.6 8bcv:B, 8bcw:B, 7dkz:B, 7ew6:B, 7ewk:B, 7f9o:B, 7f9o:f, 8htu:B, 8j6z:B, 8j7a:B, 8j7b:B, 7ksq:B, 7kux:B, 6l35:B, 5l8r:B, 3lw5:B, 2o01:B, 4rku:B, 7wfe:BB, 7wg5:AB, 7wg5:BB, 8wgh:B, 2wsc:B, 2wse:B, 2wsf:B, 4xk8:B, 4xk8:b, 7xqp:B, 4y28:B, 6yac:B, 6yez:B, 5zji:B, 6zoo:B, 6zxs:B
17 7blz:B 731 49 0.0500 0.0178 0.2653 8.7 6fos:B, 8wey:B, 5zgb:B, 5zgh:B
18 8p97:B 335 75 0.0962 0.0746 0.3333 8.9 8okv:B, 8okv:A, 8okv:C, 8okv:D, 8p98:B, 8puj:A
19 5i10:A 192 54 0.0577 0.0781 0.2778 9.3
20 4wvv:A 145 77 0.0731 0.1310 0.2468 9.6 4wvw:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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