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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GCGELVWVGEPLTLRTAETITGKYGVWMRDPKPTYPYTQETTWRIDTVGTDVRQVFEYDLISQFMQGYPSKVHILPRPLE
STGAVVYSGSLYFQGAESRTVIRYELNTETVKAEKEIPGAGYHGQFPYSWGGYTDIDLAVDEAGLWVIYSTDDAKGAIVL
SKLNPENLELEQTWETNIRKQSVANAFIICGTLYTVSSYTSADATVNFAYDTGTGISKTLTIPFKNRYKYSSMIDYNPLE
KKLFAWDNLNMVTYDIKLS

The query sequence (length=259) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6ou1:A 260 259 0.9189 0.9154 0.9189 2.84e-179 8frr:A, 6ou1:B, 7sib:A, 7sij:A, 7sjt:A, 7sju:A, 7sjv:A, 7sjw:A, 7skd:A, 7ske:A, 7skf:A, 7skg:A, 7t8d:A, 4wxq:A, 4wxs:A, 4wxu:A
2 6nax:A 259 258 0.8764 0.8764 0.8798 1.59e-175 6nax:B
3 6qm3:A 268 258 0.4054 0.3918 0.4070 2.27e-68 6qhj:A, 6qm3:B, 4xat:A
4 5ftt:G 368 243 0.3591 0.2527 0.3827 5.29e-55 5afb:A, 5cmn:E, 5cmn:F, 5cmn:G, 5cmn:H, 5ftt:C, 5ftt:D, 5ftt:H, 5ftu:C, 5ftu:D, 5ftu:G, 5ftu:H, 5ftu:K, 5ftu:L, 4rmk:A, 4rml:A, 4yeb:A
5 6ska:D 347 259 0.3552 0.2651 0.3552 2.86e-50 2jxa:A
6 7mxb:A 672 110 0.1351 0.0521 0.3182 0.083 7mxb:B, 7mxj:A, 7mxk:A
7 6k61:B 740 77 0.0927 0.0324 0.3117 1.6 6jeo:aB, 6jeo:bB, 6jeo:cB, 6jeo:dB, 6k61:b, 6tcl:B1, 6tcl:B2, 6tcl:B, 6tcl:BB, 7y3f:B
8 5i10:A 192 54 0.0618 0.0833 0.2963 1.8
9 8bdb:A 480 73 0.0734 0.0396 0.2603 5.2 8bdb:C, 8bdb:E, 8bdb:G, 8bdb:I, 8bdb:K, 8bdb:M, 8bdb:O
10 7sh1:A 626 58 0.0579 0.0240 0.2586 5.8 7sh1:B
11 6igz:B 733 49 0.0579 0.0205 0.3061 6.0
12 3hlf:A 425 45 0.0618 0.0376 0.3556 8.6 3hld:A, 3hle:A, 3hlg:A
13 6o8c:A 636 42 0.0656 0.0267 0.4048 9.0 4iwo:A, 4iwp:A, 4iwq:A, 6rsr:A, 6rst:A, 6rsu:A
14 4im0:A 619 42 0.0656 0.0275 0.4048 9.8 6bny:A, 6bod:A, 6boe:A, 6cq0:A, 6cq4:A, 6cq5:A, 4im2:A, 4im3:A, 6nt9:A, 6nt9:B, 5w5v:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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