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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GAVATGEYRNLFAEIGKSEIDIQRKIDEAFQHLFYGDAKDAAVYYQAGGNENGPLAYVYDVNSNDVRSEGMSYGMMITVQ
MDKKAEFDAIWNWAKTYMYQDSPTHPAFGYFAWSMRRDGVANDDMPAPDGEEYFVTALYFAAARWGNGEGIFNYQQEADT
ILSRMRHRQVITGPTNRGVMTATNLFHPEEAQVRFTPDINNADHTDASYHLPSFYEIWARVAPQEDRAFWAKAADVSRDY
FAKAAHPVTALTPDYGNFDGTPWAASWRPESVDFRYDAWRSVMNWSMDYAWWGKDSGAPARSDKLLAFFETQEGKMNHLY
SLDGKPLGGGPTLGLISMNATAAMAATDPRWHNFVEKLWQQQPPTGQYRYYDGVLYLMALLHCAGEYKAWIPD

The query sequence (length=393) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6g0b:A 393 393 1.0000 1.0000 1.0000 0.0 6g09:A, 6g0n:A
2 1wu5:A 376 396 0.4071 0.4255 0.4040 3.05e-88 1wu6:A
3 6trh:C 385 393 0.3868 0.3948 0.3868 4.40e-87 6srd:A, 6srd:B, 6sud:A, 6sud:B, 6to0:A, 6to0:B, 6tow:A, 6tow:B, 6trh:A, 6trh:B, 6trh:D
4 2b4f:A 404 415 0.3537 0.3441 0.3349 7.95e-55 1h12:A, 1xwq:A
5 1kwf:A 363 335 0.2265 0.2452 0.2657 1.93e-20
6 3qxq:A 338 143 0.0840 0.0976 0.2308 0.006 3qxq:B, 3qxq:C, 3qxq:D
7 7f82:A 338 152 0.0865 0.1006 0.2237 0.011 7f82:B, 7f82:C, 7f82:D
8 2qjc:A 222 36 0.0407 0.0721 0.4444 0.97
9 6y3z:A 243 66 0.0509 0.0823 0.3030 2.1
10 3ml1:A 799 62 0.0509 0.0250 0.3226 3.7 3o5a:A
11 7ysh:D 213 98 0.0611 0.1127 0.2449 6.8 1fq9:C, 1fq9:D, 7ysh:E
12 1uwg:H 208 32 0.0305 0.0577 0.3750 7.0 1uwg:Y
13 4tuo:C 211 36 0.0280 0.0521 0.3056 7.7 4tuj:A, 4tuj:C, 4tuk:H, 4tul:H, 4tuo:A
14 1igj:B 217 37 0.0305 0.0553 0.3243 8.6 1igj:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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