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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GASGDVCQDCIQMVTDIQTAVRTNSTFVQALVEHVKEECDRLGGMADICKNYISQYSEIAIQMMMHMQPKEICALVGFCD

The query sequence (length=80) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6slr:B 81 81 1.0000 0.9877 0.9877 4.82e-54 6slr:C, 4v2o:B, 4v2o:C
2 7k5b:B 4524 49 0.1500 0.0027 0.2449 1.1 8bx8:B, 7k58:B, 7kek:B
3 1x8d:A 104 32 0.1625 0.1250 0.4062 1.9 1x8d:B, 1x8d:C, 1x8d:D
4 3mx6:B 260 76 0.2125 0.0654 0.2237 1.9 3mr1:A, 3mr1:B, 3mr1:C, 3mr1:D, 3mx6:A
5 8h68:A 624 43 0.1500 0.0192 0.2791 2.1 8hb2:A, 8hb2:B, 8hb2:C, 8hb2:D, 8hbb:A, 8hbb:B, 8hbb:C, 8hbb:D
6 4e84:A 313 23 0.1125 0.0288 0.3913 3.4 4e84:B, 4e8w:A, 4e8w:B, 4e8y:A, 4e8y:B, 4e8z:A, 4e8z:B
7 1zjc:A 413 22 0.1000 0.0194 0.3636 5.0
8 4fb3:A 115 68 0.2125 0.1478 0.2500 5.5 4fb3:B, 4fb3:E
9 8sgh:A 844 22 0.1250 0.0118 0.4545 5.7 7cyl:A, 4fdd:A, 4fq3:A, 2h4m:A, 5j3v:A, 5j3v:B, 4jlq:A, 4oo6:A, 2ot8:A, 5tqc:A, 7vpw:A, 5yvi:A, 2z5k:A, 2z5m:A, 2z5n:A, 2z5o:A
10 5yvg:A 830 22 0.1250 0.0120 0.4545 5.9 2h4m:B, 2ot8:B, 5yvh:A
11 5yvg:B 764 22 0.1250 0.0131 0.4545 6.2
12 3g5a:B 305 22 0.1250 0.0328 0.4545 6.4 3fwk:A, 3g59:A, 3g5a:A, 3g5a:C, 3g5a:D, 3g5a:E, 3g5a:F, 3g6k:A, 3g6k:B, 3g6k:C, 3g6k:D, 3g6k:E, 3g6k:F, 4kkv:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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