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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GARTWRFLTFGLALPSVALCTLNSWLHSGHRERPAFIPYHHLRIRTKPFSWGDGNHTFFHNPRVNPLPTGYE

The query sequence (length=72) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3abk:G 84 72 1.0000 0.8571 1.0000 7.06e-50 3abk:T, 3ag1:G, 3ag1:T, 3ag2:G, 3ag2:T, 3ag3:T, 3ag4:T, 5b3s:G, 7coh:G, 7coh:T, 2dyr:G, 2dyr:T, 2dys:G, 2dys:T, 2eij:G, 2eij:T, 2eik:G, 2eik:T, 2eil:G, 2eil:T, 2eim:T, 2ein:G, 2ein:T, 7ev7:G, 7ev7:T, 8gbt:G, 8gcq:G, 8h8s:T, 8h8s:G, 8ijn:T, 6jy3:G, 6jy4:G, 6nkn:G, 6nkn:T, 7thu:G, 7tie:G, 7tih:G, 7vuw:G, 7vuw:T, 7vvr:G, 5wau:g, 3x2q:T, 7y44:G, 7y44:T, 7ypy:G, 7ypy:T
2 6fhq:A 58 17 0.0972 0.1207 0.4118 4.0 6fhq:B, 6fi1:A, 6fi1:B, 4qf3:A, 4qf3:B
3 4gd3:A 179 53 0.2222 0.0894 0.3019 4.1 6g94:A, 6g94:B, 4gd3:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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