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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GAMWLTKLVLNPASRAARRDLANPYEMHRTLSKAVSRALEEGRERLLWRLEPARGLEPPVVLVQTLTEPDWSVLDEGYAQ
VFPPKPFHPALKPGQRLRFRLRANPAKRLAATGKRVALKTPAEKVAWLERRLEEGGFRLLEGERGPWVQILQDTFLEVRR
KKDGEEAGKLLQVQAVLFEGRLEVVDPERALATLRRGVGPGKALGLGLLSVAP

The query sequence (length=213) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2y8w:A 215 213 1.0000 0.9907 1.0000 5.60e-149 3qrp:A, 3qrq:A, 3qrr:A, 2y8y:A, 2y9h:A, 2y9h:C, 2y9h:E, 2y9h:G, 2y9h:I
2 2y9h:M 193 213 0.9061 1.0000 0.9061 5.55e-127 2y9h:K, 2y9h:O
3 8yha:B 268 266 0.3850 0.3060 0.3083 3.45e-17 8yb6:B
4 5cd4:A 199 222 0.3192 0.3417 0.3063 5.58e-17 5cd4:M, 4tvx:A, 4tvx:M, 4u7u:D, 4u7u:P
5 6c66:O 212 220 0.3099 0.3113 0.3000 2.78e-14 5u0a:A
6 5h9f:K 159 211 0.3005 0.4025 0.3033 4.96e-14 5h9e:K
7 4qyz:K 152 210 0.2723 0.3816 0.2762 1.10e-09
8 5u07:A 190 217 0.2958 0.3316 0.2903 7.51e-07
9 2okk:A 483 76 0.1080 0.0476 0.3026 0.071
10 8gz0:B 160 36 0.0704 0.0938 0.4167 1.3 8gz0:A, 7wrk:A, 7wwn:A, 7wwo:A, 7wwo:B
11 6jdq:A 1069 40 0.0516 0.0103 0.2750 3.8 6je4:A, 6je4:E, 6je4:K, 6je9:A
12 6jdv:A 1036 40 0.0516 0.0106 0.2750 3.8 6kc8:A
13 6kc7:A 963 40 0.0516 0.0114 0.2750 4.1
14 6je4:O 1049 40 0.0516 0.0105 0.2750 4.1 8hj4:A, 8ja0:A, 6je9:C
15 6jx3:B 85 59 0.0892 0.2235 0.3220 7.7
16 6fdz:U 265 61 0.0798 0.0642 0.2787 7.7 6fdy:U

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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