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BioLiP
>protein
GAMWHTHSEREKRVSNAVEFLLDSRVRRTPTSSKVHFLKSKGLSAEEICEAFTKVGQPKTLNEIKRILS

The query sequence (length=69) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6s6r:A 69 69 1.0000 1.0000 1.0000 1.22e-46 5l87:A, 5l8a:A, 5l8a:B, 5l8a:C, 5l8a:D, 5n8v:A, 5n8v:B, 5n8v:D, 5n8v:F, 5oml:A, 5oml:D, 5oml:B, 5oml:C, 6rt2:A, 6rt2:D, 6rt2:B, 6rt2:C, 6s7m:A, 6s7m:B, 6s7m:C, 6s7m:D, 6s7m:H, 6s7m:E, 6spt:A
2 7qrc:B 61 60 0.5362 0.6066 0.6167 1.76e-21 7qrc:A
3 4bxu:A 69 60 0.4058 0.4058 0.4667 1.22e-10 2w84:A, 2w85:A
4 3ff5:A 54 45 0.3188 0.4074 0.4889 1.21e-08 3ff5:B
5 1v1m:A 372 64 0.2464 0.0457 0.2656 4.3 2bfb:A, 2bfc:A, 1olu:A, 1v11:A, 1v16:A, 1x7w:A, 1x7x:A, 1x7y:A, 1x80:A
6 3o7j:A 166 37 0.1739 0.0723 0.3243 5.2
7 2oso:A 157 36 0.2319 0.1019 0.4444 7.1 2osd:A
8 5x8p:v 190 31 0.1739 0.0632 0.3871 8.2 5mmj:v, 5mmm:v, 5x8r:v
9 6ysl:E 255 32 0.1449 0.0392 0.3125 8.9 6ysl:D, 6ysl:G, 6ysl:F, 6ysl:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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