Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GAMSYSLYGTTLEQQYNKPLSDLLIRCINCQKPLSPEEKQRHLDKKQRFHNIRGRWTGRCMSCSRSSRTRRETQL

The query sequence (length=75) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4xr8:H 151 72 0.9600 0.4768 1.0000 1.35e-48 2ljx:A, 2ljy:A, 2ljy:B, 2ljz:A
2 7uaj:B 512 64 0.8533 0.1250 1.0000 6.07e-44 2fk4:A, 8gcr:A, 4giz:C, 4giz:D, 8jrn:D, 8jrn:B, 8jro:D, 8jro:B, 8jrp:B, 8jrp:D, 8jrq:B, 8jrq:D, 8jrr:B, 8jrr:D, 8r1f:B, 8r1g:B, 8r1g:E, 6siv:B, 6sja:B, 7uaj:A, 7uaj:C, 7uaj:D, 4xr8:F
3 6slm:A 539 71 0.7067 0.0983 0.7465 5.37e-34
4 2m3l:A 76 73 0.5733 0.5658 0.5890 5.13e-26
5 6sjv:A 529 71 0.4933 0.0699 0.5211 8.61e-21 6sqc:A
6 6smv:A 525 59 0.2400 0.0343 0.3051 6.75e-06
7 3py7:A 500 58 0.2800 0.0420 0.3621 3.96e-04
8 3a7h:B 291 30 0.1467 0.0378 0.3667 0.41 3a7h:A, 3a7i:A, 3a7j:A, 7b30:A, 7b31:A, 7b32:A, 7b33:A, 7b34:A, 7b35:A, 7b35:B, 8bzi:A, 8bzj:A, 8bzj:B, 3ckx:A, 4o27:B, 8qlq:A, 8qlr:B, 8qlr:A, 8qls:A, 8qlt:A, 4qml:A, 4qmm:A, 4qmn:A, 4qmo:A, 4qmp:A, 4qmq:A, 4qms:A, 4qmt:A, 4qmu:A, 4qmv:A, 4qmw:A, 4qmx:A, 4qmy:A, 4qmz:A, 4qna:A, 4qo9:A, 4qo9:B, 4u8z:A, 4w8d:A, 4w8e:A
9 4jz7:A 285 31 0.1733 0.0456 0.4194 0.68 4jz7:B
10 4jz7:C 316 31 0.1733 0.0411 0.4194 0.69 4jz7:D, 4jz8:A, 4jz8:B, 4jz8:C, 4jz8:D, 4jz9:A, 4jz9:B, 4jz9:C, 4jz9:D, 4olc:A, 4olc:C
11 3uh1:A 367 30 0.1333 0.0272 0.3333 1.4 2qrj:A, 2qrk:A, 3uha:A, 3uha:B
12 1e7d:A 157 35 0.1467 0.0701 0.3143 1.7 1e7d:B, 1e7l:A, 1e7l:B, 1en7:A, 1en7:B, 2qnc:A, 2qnc:B, 2qnf:A, 2qnf:B
13 2das:A 62 24 0.1600 0.1935 0.5000 2.5
14 2cup:A 101 39 0.1600 0.1188 0.3077 2.9
15 4hb9:A 376 51 0.2000 0.0399 0.2941 3.7
16 2xik:A 289 30 0.1333 0.0346 0.3333 4.0 4nzw:B, 7z4v:A
17 2dcu:A 407 29 0.1467 0.0270 0.3793 4.6 2d74:A, 1kjz:A, 1kk0:A, 1kk1:A, 1kk2:A, 1kk3:A
18 1rqg:A 606 42 0.1867 0.0231 0.3333 6.9
19 3qum:Q 237 28 0.1600 0.0506 0.4286 7.8 2zck:P
20 6ulw:A 1193 30 0.1467 0.0092 0.3667 8.3 6ulw:D, 6ulx:A, 6uly:A, 6uly:B

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218