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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GAMIHAISAVNRHLYEDVLEQHFRLRHDIFVEERHWETLRRPDGREVDSYDDEDTVYLLALEGRRVVGGHRLYPTTKPSM
MSEVFPHLAAVRGCPSDPLIWEWSRYFVVRDRRDGALNLQLMAAVQEFCLDQGIAQVSAIMETWWLPRFHEAGFVVTPLG
LPALVENAWTMAATVDIRRQTLDVLHDRIGMPSIVQQDGPRLDAVARANLC

The query sequence (length=211) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5w8e:A 213 211 1.0000 0.9906 1.0000 1.40e-157 5w8a:A, 5w8c:A, 5w8d:A, 5w8g:A
2 6wn0:B 213 178 0.3649 0.3615 0.4326 2.13e-44 6wn0:A
3 3p2h:A 184 162 0.2370 0.2717 0.3086 5.45e-15
4 1ro5:A 197 185 0.2370 0.2538 0.2703 1.42e-11
5 5jph:B 144 148 0.1517 0.2222 0.2162 0.006 5jph:A, 5jph:C
6 1k4j:A 193 81 0.1137 0.1244 0.2963 0.13
7 6lg1:A 429 86 0.1043 0.0513 0.2558 0.56 6lg1:B
8 1w7c:A 737 52 0.0806 0.0231 0.3269 1.4 1n9e:A, 1n9e:B, 1n9e:C, 1n9e:D, 1rky:A
9 7pw9:A 1952 54 0.0853 0.0092 0.3333 1.5 7pw4:A, 7pw5:A, 7pw6:A, 7pw7:A, 7pw8:A, 6z3r:A
10 3eii:A 208 47 0.0569 0.0577 0.2553 2.1 3eii:B, 3eii:C, 3eii:D, 3eja:A, 3eja:B, 3eja:C, 3eja:D
11 6syt:A 1896 47 0.0758 0.0084 0.3404 2.6
12 1s5k:A 153 49 0.0711 0.0980 0.3061 3.3 1s3z:A, 1s3z:B, 1s5k:B, 1s60:A, 2vbq:A, 2vbq:B
13 2obv:A 384 21 0.0616 0.0339 0.6190 6.2 1o90:A, 1o90:B, 1o92:A, 1o92:B, 1o93:A, 1o93:B, 1o9t:A, 1o9t:B, 8swa:A
14 5ugh:B 365 21 0.0569 0.0329 0.5714 8.9 6fbn:B, 4ktt:A, 4ktt:C, 4ktv:C, 4ndn:C, 7rw5:D
15 8p4h:A 388 21 0.0569 0.0309 0.5714 9.5 5a19:A, 5a1g:A, 5a1i:A, 8axz:A, 7bhr:A, 7bhs:A, 7bht:A, 7bhu:A, 7bhv:A, 7bhw:A, 7bhx:A, 6fbn:A, 6fbo:A, 6fbp:A, 6fbp:B, 6fcb:A, 6fcd:A, 6g6r:A, 7kcc:A, 7kce:A, 7kcf:A, 7kda:A, 7kdb:A, 4ktt:B, 4ktt:D, 4ktv:A, 4ktv:B, 4ktv:D, 7l1a:A, 7lnh:A, 7lnh:B, 4ndn:A, 4ndn:B, 4ndn:D, 8oog:A, 2p02:A, 8p1t:AAA, 8p1v:AAA, 8p1w:AAA, 8p4h:B, 8p4h:C, 8p4h:D, 6p9v:A, 8qdy:A, 8qdz:A, 8qe0:A, 8qe1:A, 8qe2:A, 8qe3:A, 7rw5:A, 7rw5:B, 7rw5:C, 7rw7:A, 7rwg:A, 7rwh:A, 7rxv:A, 7rxw:A, 7rxx:A, 5ugh:A, 5ugh:C, 5ugh:D, 6wkb:A, 6wkb:B, 8xam:A, 8xam:B, 8xar:A, 8xb0:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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