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BioLiP
>protein
GAMIESSTTIQVISAGLPRTGTKSLKNALEIIYHKPCYHMFEIIFNKQSDIIKWQNLIHDSHMITTLTTKTIAIYDKLKE
LLDGYIATTDLPTCGFYKDLMNIYPNAKVLLTIRDKYDWLHSLRKVVLPKSNDPWKLKIEEGDKVLGLNSDFYKLSEDSL
KFAFQKDDLNFDDDQVLLECYDEYNRLVQETVPSDRLLVLRLGDGWEPLCKFLNVEIPNGIDYPCVNSHHQMTQLTEQLI
KYKSLDAIIHMFPDLI

The query sequence (length=256) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6bdq:A 259 259 0.9961 0.9846 0.9846 0.0 6b4x:A, 6b4y:A, 6b4z:A, 6b50:A, 6bdp:A, 6bdr:A, 6bds:A, 5byj:A, 5byk:A, 8e5q:A, 8e5r:A, 6mfe:A, 4mua:A, 4mub:A, 6uux:A
2 6b51:A 246 249 0.7500 0.7805 0.7711 6.09e-143 6b52:A, 6b53:A, 6b53:B, 6b54:A, 5tiv:A, 5tiw:A, 5tiw:B, 5tix:A, 5tix:B, 5tiy:A, 6uuy:A, 6uuy:B
3 5tiz:A 253 241 0.5820 0.5889 0.6183 1.15e-108
4 8y9p:A 195 211 0.2539 0.3333 0.3081 1.30e-30
5 1kfl:A 350 80 0.0938 0.0686 0.3000 1.7 5cks:A, 5cks:B, 5cks:C, 5cks:D, 8e0s:A, 8e0s:B, 8e0s:C, 8e0s:D, 8e0t:B, 8e0t:C, 8e0v:A, 8e0v:B, 8e0v:C, 8e0v:D, 8e0x:A, 8e0x:B, 8e0x:C, 8e0x:D, 8e0y:C, 1gg1:A, 1gg1:B, 1gg1:C, 1gg1:D, 1kfl:B, 1kfl:C, 1kfl:D, 1kfl:E, 1kfl:F, 1kfl:G, 1kfl:H, 1n8f:A, 1n8f:B, 1n8f:C, 1n8f:D, 1qr7:A, 1qr7:B, 1qr7:C, 1qr7:D, 7rud:B, 7rud:C, 7rud:D, 7rue:A, 7rue:B, 7rue:C, 7rue:D
6 5b82:A 161 30 0.0508 0.0807 0.4333 2.7
7 8h67:L 496 88 0.0859 0.0444 0.2500 4.0 8h7q:K, 8h7q:N, 8ip0:J, 8ip0:K, 8ip0:L
8 5wrj:A 275 31 0.0547 0.0509 0.4516 4.7 5wri:A, 5wri:B, 5wrj:B, 5wrj:C, 5wrj:D
9 4xuk:A 291 37 0.0508 0.0447 0.3514 4.9 4xuk:B
10 2vl4:B 841 95 0.1016 0.0309 0.2737 5.2 7op6:A, 7op6:B, 7op7:A, 7op7:B, 2vjx:A, 2vjx:B, 2vl4:A, 2vmf:A, 2vmf:B, 2vo5:A, 2vo5:B, 2vot:A, 2vot:B, 2vqt:A, 2vqt:B, 2vqu:A, 2vqu:B, 2vr4:A, 2vr4:B, 2wbk:A, 2wbk:B
11 6ahd:O 141 17 0.0312 0.0567 0.4706 6.6 6ah0:O, 4bwq:A, 4bwq:C, 4bwq:E, 4bwq:G, 4bws:A, 4bws:D, 8h6e:4F, 8h6k:4F, 8h6l:4F, 5o9z:J, 8q7n:D, 8qo9:D, 8qoz:D, 8qp8:D, 8qpa:D, 8qpb:D, 8qpe:D, 8qpk:D, 6qw6:5D, 6qx9:5D, 8qxd:D, 8qzs:D, 8r09:D, 8r0a:D, 8r0b:D, 8rm5:D
12 3ap2:A 300 31 0.0508 0.0433 0.4194 9.6 3ap1:A, 3ap1:B, 3ap2:B, 3ap3:A, 3ap3:B, 3ap3:C, 3ap3:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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