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BioLiP
>protein
GAMGSFNSSINNIHEMEIQLKDALEKNQQWLVYDQQREVYVKGLLAKIFELEKKTE

The query sequence (length=56) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3wuv:Q 62 56 1.0000 0.9032 1.0000 1.76e-36 3e1r:A, 3e1r:B, 3wut:A, 3wut:B, 3wut:D, 3wut:E, 3wut:G, 3wut:H, 3wut:J, 3wut:K, 3wuu:A, 3wuu:B, 3wuu:D, 3wuu:E, 3wuu:J, 3wuu:K, 3wuu:G, 3wuu:H, 3wuv:A, 3wuv:B, 3wuv:D, 3wuv:E, 3wuv:G, 3wuv:H, 3wuv:J, 3wuv:K, 3wuv:M, 3wuv:N, 3wuv:P
2 6vlz:Q 240 34 0.2321 0.0542 0.3824 0.51 7a5f:Q3, 7a5g:Q3, 7a5h:Q, 7a5i:Q3, 7a5j:Q, 7a5k:Q3, 8any:Q, 6i9r:Q, 3j7y:Q, 3j9m:Q, 8k2a:LS, 8k2b:LS, 7l08:Q, 7l20:Q, 6nu2:Q, 6nu3:Q, 7o9k:Q, 7o9m:Q, 7odr:Q, 7ods:Q, 7odt:Q, 7of0:Q, 7of2:Q, 7of3:Q, 7of4:Q, 7of5:Q, 7of6:Q, 7of7:Q, 7og4:XQ, 7oi7:Q, 7oi8:Q, 7oi9:Q, 7oia:Q, 7oib:Q, 7oic:Q, 7oid:Q, 7oie:Q, 8oir:BX, 8oit:BX, 5ool:Q, 5oom:Q, 7pd3:Q, 8pk0:Q, 7po4:Q, 7qh6:Q, 7qh7:Q, 7qi4:Q, 7qi5:Q, 7qi6:Q, 8qsj:Q, 8qu1:Q, 8qu5:Q, 6vmi:Q, 8xt0:LS, 8xt1:LS, 8xt2:LS, 8xt3:LS, 6zm5:Q, 6zm6:Q, 6zs9:XQ, 6zsa:XQ, 6zsb:XQ, 6zsc:XQ, 6zsd:XQ, 6zse:XQ, 6zsg:XQ
3 2wys:B 516 32 0.2143 0.0233 0.3750 1.5 2w5f:A, 2w5f:B, 2wys:A, 2wze:A, 2wze:B
4 8pv4:CR 390 18 0.1607 0.0231 0.5000 2.4
5 4qhz:C 240 28 0.1786 0.0417 0.3571 2.5 4qhz:A, 4qhz:B, 4qhz:D
6 8pv6:CR 516 18 0.1607 0.0174 0.5000 4.4 8pv8:CR
7 7pub:Cr 267 32 0.1964 0.0412 0.3438 5.9 6hiv:Cr, 6hiw:Cr, 6hiy:Cr
8 5gp4:A 441 52 0.2679 0.0340 0.2885 7.1 5gp4:C, 5gp4:B
9 6jon:A 280 26 0.1429 0.0286 0.3077 8.2 6jop:A, 6joq:A, 6k9a:A, 7rr3:A, 7rr4:A
10 7x4y:E 459 37 0.1964 0.0240 0.2973 8.5 7x4l:A, 7x4l:F, 7x4l:B, 7x4l:E, 7x4l:C, 7x4l:D, 7x4y:A, 7x4y:C, 7x4y:B, 7x4y:D, 7x4y:F, 7x51:A, 7x51:B, 7x51:C, 7x51:D, 7x51:F, 7x51:E, 7x52:A, 7x52:C, 7x52:B, 7x52:E, 7x52:D, 7x52:F
11 8arv:A 255 22 0.1786 0.0392 0.4545 8.9 8arv:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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