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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GAMGKVTHSIHIEKADTYGFSLSSVEEIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQPSLGL
LVRTYPE

The query sequence (length=87) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4gvc:A 94 93 1.0000 0.9255 0.9355 1.28e-55 4gvd:A, 4gvd:B, 3kze:A, 3kze:B, 3kze:C, 4nxq:A, 4nxq:B, 4nxq:C, 4nxr:A
2 2os6:A 89 55 0.2529 0.2472 0.4000 4.29e-05
3 6x23:A 89 40 0.1839 0.1798 0.4000 8.68e-05
4 2r4h:C 98 63 0.2644 0.2347 0.3651 0.003
5 4wyu:A 201 61 0.2529 0.1095 0.3607 0.006 8b8o:B, 8b8o:A, 8b9t:A, 8bj0:A, 7qs8:A, 7qs8:B, 7qsa:A, 7qsa:B, 7qtu:B, 7qtu:A, 7qtu:E, 7qtu:G, 5vwi:A, 5vwi:B, 4wyu:B, 6xa6:B, 6xa6:A
6 6yx0:B 112 91 0.2414 0.1875 0.2308 0.009 7a00:A, 7a00:B, 1q3p:A, 1q3p:B, 3qjm:A, 3qjm:B, 3qjn:A, 3qjn:B, 3qjn:C, 3qjn:D, 3qjn:E, 3qjn:F, 3qjn:G, 3qjn:H, 8s1r:AAA, 8s1r:BBB, 8s1r:CCC, 8s1r:DDD, 6ywz:B, 6ywz:A, 6yx0:A, 6yx1:A, 6yx1:B, 6yx2:A, 6yx2:B
7 3tsz:A 341 49 0.1954 0.0499 0.3469 0.010 3shw:A
8 8b82:A 108 30 0.1264 0.1019 0.3667 0.054 8b82:B, 8b87:A, 8b87:B, 8bia:A, 8cd3:B, 6ms1:A, 6ms1:B, 6mtu:B, 6mtu:A, 6mtv:A, 6mtv:B, 6mye:A, 7qrs:B, 7qrs:A, 7qs9:A, 7qs9:B, 7qto:A, 7qto:B, 7qtp:A, 5vwk:D, 5vwk:C, 5vwk:B, 5vwk:A, 6xa8:B, 6xa8:A
9 2m0v:A 128 40 0.1724 0.1172 0.3750 0.055
10 4wsi:A 372 72 0.2414 0.0565 0.2917 0.088 7m4r:A, 7ntj:B, 7ntj:A, 7ntk:A, 7ntk:D, 7ntk:B, 7ntk:F, 7qcs:A, 7qcs:B, 4uu5:A, 4wsi:B
11 4ynn:A 400 58 0.2069 0.0450 0.3103 0.13 4ynn:B, 4ynn:C, 4ynn:D, 4ynn:E, 4ynn:F, 4ynn:G, 4ynn:H
12 2l4t:A 124 27 0.1379 0.0968 0.4444 0.17 3diw:A, 3diw:B, 4e3b:A, 4e3b:B, 3gj9:A, 3gj9:B, 4nnl:A, 4nnl:B, 4nnm:A, 4nnm:B, 3sfj:A, 3sfj:C, 2vz5:A
13 6ezi:A 86 42 0.1494 0.1512 0.3095 0.19 3tmh:A, 3tmh:E, 3tmh:I
14 3bpu:A 86 35 0.1494 0.1512 0.3714 0.20
15 5wou:A 95 59 0.1954 0.1789 0.2881 0.38
16 2kqf:A 96 81 0.2299 0.2083 0.2469 0.38 2kyl:A
17 2m0u:A 117 42 0.1724 0.1282 0.3571 0.51
18 8blu:B 195 71 0.2184 0.0974 0.2676 0.65 5a2p:A, 5a2p:B, 5a2p:D, 5a2p:C, 8aai:A, 8aai:B, 8aai:C, 8aai:D, 8aak:A, 8aak:B, 8aao:A, 8aao:B, 8aap:A, 8aap:B, 6ak2:A, 6ak2:B, 8blu:C, 8blu:D, 8blv:A, 8blv:B, 7fsg:B, 7fsg:C, 7fsg:D, 7fsh:B, 7fsh:C, 7fsh:D, 7fsi:B, 7fsi:C, 7fsi:D, 7fsj:A, 7fsj:B, 7fsj:C, 7fsj:D, 7fsk:B, 7fsk:C, 7fsk:D, 7fsl:A, 7fsl:B, 7fsl:C, 7fsl:D, 7fsm:A, 7fsm:B, 7fsm:C, 7fsm:D, 7fsn:A, 7fsn:B, 7fsn:C, 7fsn:D, 7fso:B, 7fso:C, 7fso:D, 7fsp:B, 7fsp:C, 7fsp:D, 7fsq:B, 7fsq:A, 7fsq:C, 7fsq:D, 7fsr:B, 7fsr:C, 7fsr:D, 7fss:A, 7fss:B, 7fss:C, 7fss:D, 7fst:B, 7fst:C, 7fst:D, 7fsu:B, 7fsu:C, 7fsu:D, 7fsv:A, 7fsv:B, 7fsv:C, 7fsv:D, 7fsw:A, 7fsw:B, 7fsw:C, 7fsw:D, 7fsx:B, 7fsx:C, 7fsx:D, 7fsy:A, 7fsy:B, 7fsy:C, 7fsy:D, 7fsz:B, 7fsz:C, 7fsz:D, 7ft0:B, 7ft0:C, 7ft0:D, 7ft1:B, 7ft1:C, 7ft1:D, 7ft2:B, 7ft2:C, 7ft2:D, 7ft3:B, 7ft3:A, 7ft3:C, 7ft3:D, 7ft4:A, 7ft4:B, 7ft4:C, 7ft4:D, 7ft5:A, 7ft5:B, 7ft5:C, 7ft5:D, 7ft6:B, 7ft6:C, 7ft6:D, 7ft7:A, 7ft7:B, 7ft7:C, 7ft7:D, 7ft8:B, 7ft8:C, 7ft8:D, 7ft9:B, 7ft9:C, 7ft9:D, 7fta:B, 7fta:C, 7fta:D, 7ftb:B, 7ftb:C, 7ftb:D, 7ftc:B, 7ftc:C, 7ftc:D, 7ftd:A, 7ftd:C, 7ftd:B, 7ftd:D, 5g1d:B, 5g1d:A, 8hck:A, 8hu2:A, 1obx:A, 1oby:A, 1oby:B, 1obz:A, 6r9h:A, 6r9h:C, 6rlc:A, 6rlc:B, 6rlc:C, 6rlc:D, 1v1t:B, 1v1t:A, 1w9e:A, 1w9e:B, 1w9o:B, 1w9o:A, 1w9q:B, 1ybo:A, 1ybo:B, 4z33:A, 4z33:B
19 3pv3:A 392 58 0.2184 0.0485 0.3276 0.70 3pv3:B, 3pv3:C, 3pv3:D
20 2ejy:A 85 35 0.1724 0.1765 0.4286 0.84
21 7x2e:A 163 27 0.1149 0.0613 0.3704 0.95 2kbs:A
22 2bh4:X 121 45 0.1724 0.1240 0.3333 1.2 2bgv:X, 2bh5:X
23 5eq6:A 357 21 0.1494 0.0364 0.6190 1.3 5eou:B, 5eox:A, 5eox:B, 5eoy:A, 5eoy:B, 5eq6:B
24 3o5n:E 92 38 0.1494 0.1413 0.3421 1.4
25 1zub:A 109 56 0.2184 0.1743 0.3393 1.6
26 7pcb:A 415 27 0.1264 0.0265 0.4074 1.8 7e0b:A, 5elq:A, 5elq:B, 5em9:A, 5ema:A, 5emb:A, 7p72:A, 3qgl:A, 3qgl:B, 3qgl:C, 3qgl:D, 3qgl:E, 4z8j:A
27 6de6:B 652 71 0.1954 0.0261 0.2394 2.1
28 3cs0:A 392 60 0.2184 0.0485 0.3167 2.8 8f0a:A, 8f0a:B, 8f0a:C, 8f0u:A, 8f1t:A, 8f1t:B, 8f1t:C, 8f1u:A, 8f1u:B, 8f1u:C, 8f21:A, 8f21:B, 8f21:C, 8f26:A, 6jjk:A, 6jjk:B, 6jjk:C, 6jjk:D, 6jjk:E, 6jjk:F, 6jjl:A, 6jjl:B, 6jjl:C, 6jjl:D, 6jjl:E, 6jjl:F, 6jjo:A, 6jjo:B, 6jjo:C, 6jjo:D, 6jjo:E, 6jjo:F, 3mh5:A, 3mh5:B, 3mh6:A, 3mh7:A, 3otp:A, 3otp:B, 3otp:C, 3otp:D, 3otp:E, 3otp:F, 3ou0:A
29 3cs0:A 392 35 0.1494 0.0332 0.3714 4.0 8f0a:A, 8f0a:B, 8f0a:C, 8f0u:A, 8f1t:A, 8f1t:B, 8f1t:C, 8f1u:A, 8f1u:B, 8f1u:C, 8f21:A, 8f21:B, 8f21:C, 8f26:A, 6jjk:A, 6jjk:B, 6jjk:C, 6jjk:D, 6jjk:E, 6jjk:F, 6jjl:A, 6jjl:B, 6jjl:C, 6jjl:D, 6jjl:E, 6jjl:F, 6jjo:A, 6jjo:B, 6jjo:C, 6jjo:D, 6jjo:E, 6jjo:F, 3mh5:A, 3mh5:B, 3mh6:A, 3mh7:A, 3otp:A, 3otp:B, 3otp:C, 3otp:D, 3otp:E, 3otp:F, 3ou0:A
30 4v6x:CQ 188 39 0.1494 0.0691 0.3333 3.8 7a01:S2, 8a3d:K, 5aj0:AQ, 8b5l:Q, 8b6c:Q, 9bdl:AL18, 9bdn:AL18, 9bdp:AL18, 7bhp:LQ, 8bhf:D1, 8bpo:P2, 8btk:BQ, 7cpu:LQ, 7cpv:LQ, 4d5y:Q, 4d67:Q, 6d90:Q, 6d9j:Q, 9f1b:BQ, 9f1c:BQ, 9f1d:BQ, 7f5s:LQ, 8fkp:LB, 8fkq:LB, 8fkr:LB, 8fks:LB, 8fkt:LB, 8fku:LB, 8fkv:LB, 8fkw:LB, 8fkx:LB, 8fky:LB, 8fkz:LB, 8fl0:LB, 8fl2:LB, 8fl3:LB, 8fl4:LB, 8fl6:LB, 8fl7:LB, 8fl9:LB, 8fla:LB, 8flb:LB, 8flc:LB, 8fld:LB, 8fle:LB, 8flf:LB, 6frk:Q, 6ftg:Q, 6fti:Q, 6ftj:Q, 8g5y:LQ, 8g5z:LQ, 8g60:LQ, 8g61:LQ, 8g6j:LQ, 8glp:LQ, 6gz3:AQ, 6gz4:AQ, 6gz5:AQ, 6hcf:Q3, 6hcj:Q3, 6hcm:Q3, 6hcq:Q3, 8idt:Z, 8idy:Z, 8ie3:Z, 8ifd:2K, 8ife:2K, 8ine:Z, 8inf:Z, 8ink:Z, 6ip5:2K, 6ip6:2K, 6ip8:2K, 8ipd:Z, 8ipx:Z, 8ipy:Z, 8ir1:Z, 8ir3:Z, 3j7o:Q, 3j7p:Q, 3j7q:Q, 3j7r:Q, 3j92:Q, 3jag:Q, 3jah:Q, 3jai:Q, 3jaj:Q, 3jan:Q, 8jdj:V, 8jdk:V, 8jdl:V, 8jdm:V, 8k2c:LQ, 5lks:LQ, 6lqm:Z, 6lsr:Z, 6lss:Z, 7ls1:K2, 7ls2:K2, 6lu8:Z, 5lzs:Q, 5lzt:Q, 5lzu:Q, 5lzv:Q, 5lzw:Q, 5lzx:Q, 5lzy:Q, 5lzz:Q, 7mdz:Q, 6mtb:Q, 6mtc:Q, 6mtd:Q, 6mte:Q, 7nfx:Q, 7nwg:Q3, 7nwh:Q, 7nwi:Q, 7o7y:BQ, 7o7z:BQ, 7o80:BQ, 7o81:BQ, 7obr:Q, 8ohd:LQ, 8oj0:LQ, 8oj5:LQ, 8oj8:LQ, 6ole:R, 6olf:R, 6olg:AQ, 6oli:R, 6olz:AQ, 6om0:R, 6om7:R, 7ow7:K, 7oyd:Q, 8p2k:BQ, 6p5i:AQ, 6p5j:AQ, 6p5k:AQ, 6p5n:AQ, 8q7z:BQ, 8q87:BQ, 8qfd:Q, 7qgg:R, 8qoi:LQ, 7qvp:LQ, 7qvp:MQ, 7qwq:Q, 7qwr:Q, 7qws:Q, 6qzp:LQ, 6r5q:Q, 6r6g:Q, 6r6p:Q, 6r7q:Q, 8rjb:Q, 8rjc:Q, 8rjd:Q, 8scb:Q, 6sgc:Q2, 6swa:P, 5t2c:K, 6t59:Q3, 7tm3:Q, 7toq:AL18, 7tor:AL18, 7tut:Q, 7ucj:Q, 7uck:Q, 4ug0:LQ, 4ujc:BQ, 4ujd:AQ, 4uje:CQ, 4v5z:Bo, 6w6l:R, 6xa1:LQ, 7xnx:LQ, 7xny:LQ, 8xsx:LQ, 8xsy:LQ, 8xsz:LQ, 6y0g:LQ, 8y0w:LQ, 8y0x:LQ, 6y2l:LQ, 6y57:LQ, 6y6x:LQ, 8yoo:LQ, 8yop:LQ, 6z6l:LQ, 6z6m:LQ, 6z6n:LQ, 7zjw:LT, 7zjx:LT, 6zm7:LQ, 6zme:LQ, 6zmi:LQ, 6zmo:LQ, 6zvk:S2
31 1vc4:B 254 61 0.2529 0.0866 0.3607 3.9
32 7w6x:A 447 27 0.1149 0.0224 0.3704 3.9
33 4c2c:A 433 31 0.1724 0.0346 0.4839 4.3 4c2d:A, 4c2d:B, 4c2d:C, 4c2f:A, 4c2g:A
34 5izu:A 124 24 0.1149 0.0806 0.4167 6.6 6exj:A, 6exj:C, 5izu:C, 5ovc:A, 5ovp:A, 5ovv:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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