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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GAMESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIFEPADNKCLLRATDGKKKISTVVSSKEVNKFQMAYSNLLRA
NMDGLK

The query sequence (length=86) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4uyk:B 90 85 0.9535 0.9111 0.9647 5.75e-55 5aox:B, 5aox:E, 7nfx:t, 4uyj:B, 4uyj:D
2 1e8o:D 76 84 0.8488 0.9605 0.8690 2.52e-46 1e8o:B, 6frk:z, 3jaj:S4, 3jan:S4, 7obr:t, 6r6g:AE, 1ry1:D
3 4v58:G 2060 53 0.1977 0.0083 0.3208 0.20 4v58:H, 4v58:I, 4v58:J, 4v58:K, 4v58:L, 4v59:G, 4v59:H, 4v59:I, 4v59:J, 4v59:K, 4v59:L
4 5l58:A 376 32 0.1628 0.0372 0.4375 0.61
5 3hjk:A 150 44 0.1744 0.1000 0.3409 2.0 6cny:A, 6cny:B, 6cny:C, 6cny:D, 3d72:A, 3d72:B, 3hji:A, 3hji:B, 3hjk:B, 3is2:A, 3is2:B, 2pd7:A, 2pd7:B, 2pd8:A, 2pd8:B, 2pdr:A, 2pdr:B, 2pdr:C, 2pdr:D, 3rh8:B, 3rh8:D
6 6z1p:BI 1413 20 0.1163 0.0071 0.5000 3.5
7 1bpw:A 503 58 0.1977 0.0338 0.2931 5.8 1bpw:B, 1bpw:C, 1bpw:D
8 8k0k:B 248 49 0.2093 0.0726 0.3673 6.4 8k22:C, 8k23:C, 8k23:c, 8k24:c, 8k24:C, 8k27:B, 8k28:B, 8k29:B, 7wwv:B
9 7lnp:A 565 40 0.1395 0.0212 0.3000 8.2 7ljj:A, 7lk7:A, 7lnp:C, 7lnp:D, 7lnp:E
10 6adg:C 390 18 0.1279 0.0282 0.6111 8.2
11 8vhe:B 421 18 0.1279 0.0261 0.6111 8.9 6adg:A, 6adg:B, 6b0z:A, 6b0z:C, 6b0z:B, 6b0z:D, 8bay:A, 8bay:B, 8bay:C, 6bkx:C, 6bkx:B, 6bkx:A, 6bky:D, 6bky:C, 6bky:E, 6bky:A, 6bky:B, 6bky:F, 6bkz:A, 6bkz:B, 6bl0:A, 6bl0:B, 6bl0:C, 6bl1:B, 6bl1:A, 6bl1:C, 6bl2:C, 6bl2:A, 6bl2:B, 5de1:A, 5de1:B, 8hb9:AAA, 8hb9:BBB, 8hb9:CCC, 8hb9:DDD, 3inm:A, 3inm:B, 3inm:C, 6io0:A, 6io0:B, 5k10:A, 5k10:B, 5k11:A, 5k11:B, 8kib:A, 8kib:B, 8kib:C, 8kib:D, 4kzo:A, 4kzo:B, 4kzo:C, 4l03:A, 4l03:B, 4l03:C, 4l04:A, 4l04:B, 4l04:C, 4l04:D, 4l04:E, 4l04:F, 4l06:A, 4l06:B, 4l06:C, 4l06:D, 4l06:E, 4l06:F, 5l57:A, 5lge:A, 5lge:B, 5lge:C, 5lge:D, 3map:A, 3map:B, 3mar:B, 3mas:A, 3mas:B, 6o2y:A, 6o2y:B, 6o2y:C, 6o2z:A, 6o2z:B, 6pay:A, 6pay:D, 6pay:C, 7pjm:A, 7pjm:B, 7pjm:C, 7pjn:A, 7pjn:B, 7pjn:C, 7pjn:D, 6q6f:A, 6q6f:B, 5svf:A, 5svf:C, 5svf:B, 5svf:D, 1t09:A, 1t09:B, 1t0l:A, 1t0l:B, 1t0l:C, 1t0l:D, 8t7d:A, 8t7n:A, 8t7n:B, 8t7o:A, 8t7o:B, 5tqh:A, 5tqh:B, 5tqh:C, 5tqh:D, 6u4j:A, 6u4j:B, 4umx:A, 4umx:B, 6vei:A, 6vei:B, 6vg0:A, 6vg0:B, 6vg0:C, 8vh9:A, 8vh9:B, 8vha:A, 8vha:B, 8vha:C, 8vha:D, 8vhb:A, 8vhb:B, 8vhb:C, 8vhb:D, 8vhc:A, 8vhc:B, 8vhd:A, 8vhd:B, 8vhd:C, 8vhd:D, 8vhe:A, 8vhe:C, 8vhe:D, 8w49:A, 8w49:B, 8w49:C, 8w49:D, 5yfm:A, 5yfm:B, 5yfm:C, 5yfn:A, 5yzh:A, 5yzh:B, 5yzi:A, 5yzi:B
12 3mar:A 393 18 0.1279 0.0280 0.6111 8.9 5sun:A, 5sun:B, 8t7d:B, 8t7d:C, 8t7d:D, 4umy:A, 4umy:B, 4xrx:A, 4xrx:B, 4xs3:A, 4xs3:B
13 4i3k:A 367 18 0.1279 0.0300 0.6111 8.9 4i3k:B, 4i3l:A, 4i3l:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218