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BioLiP
>protein
GAMATPGSENVLPREPLIATAVKFLQNSRVRQSPLATRRAFLKKKGLTDEEIDMAFQQSGTAADEPSSL

The query sequence (length=69) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4bxu:A 69 69 1.0000 1.0000 1.0000 8.74e-46 2w84:A, 2w85:A
2 3ff5:A 54 46 0.6522 0.8333 0.9783 4.57e-27 3ff5:B
3 6s6r:A 69 60 0.4058 0.4058 0.4667 1.22e-10 5l87:A, 5l8a:A, 5l8a:B, 5l8a:C, 5l8a:D, 5n8v:A, 5n8v:B, 5n8v:D, 5n8v:F, 5oml:A, 5oml:D, 5oml:B, 5oml:C, 6rt2:A, 6rt2:D, 6rt2:B, 6rt2:C, 6s7m:A, 6s7m:B, 6s7m:C, 6s7m:D, 6s7m:H, 6s7m:E, 6spt:A
4 7qrc:B 61 43 0.3043 0.3443 0.4884 2.45e-09 7qrc:A
5 3duf:A 365 29 0.1884 0.0356 0.4483 0.47 3duf:C, 3duf:E, 3duf:G, 3dv0:A, 3dv0:C, 3dv0:G, 3dva:A, 3dva:C, 3dva:E, 3dva:G, 1w85:A, 1w85:C, 1w85:E, 1w85:G
6 5wno:A 302 41 0.2174 0.0497 0.3659 0.61
7 4g2d:A 314 19 0.1304 0.0287 0.4737 3.3 4ker:A, 4ker:B, 4ker:C, 4ker:D, 4kes:A, 4kes:B, 4kes:C, 4kes:D, 4ket:A, 4ket:B, 4ket:C, 4ket:D, 4keu:A, 4keu:B, 4keu:C, 4keu:D, 4kev:A, 4kev:B, 4kev:C, 4kev:D, 4kez:A, 4kez:B, 4kez:C, 4kez:D, 4kf1:A, 4kf1:B, 4kf1:C, 4kf1:D, 8sf2:D, 8sfa:D, 8sfa:S, 8sfa:b, 8sfa:t
8 7o4t:D 403 54 0.2174 0.0372 0.2778 5.5 4b3i:C, 4b3j:C, 4b3j:D, 7o1i:D, 7o1l:D, 7o4r:C, 7o4r:D, 7o4s:C, 7o4s:D, 7o4t:C, 8opu:C, 8opu:D, 8opx:C, 8opx:D, 8opy:D, 8oql:C, 8oql:D, 8oqm:D, 8oqo:C, 8oqo:D, 8oqp:C, 8oqp:D, 8oqs:C, 8oqs:D, 8pf8:C, 8pf8:D
9 3k2h:A 503 22 0.1739 0.0239 0.5455 7.4 3k2h:B, 3kjr:A, 3kjr:B, 3nrr:A, 3nrr:B
10 1q19:A 500 25 0.1594 0.0220 0.4400 7.6 1q19:B, 1q19:C, 1q19:D
11 3zjh:B 193 22 0.1449 0.0518 0.4545 8.7 3qzx:A, 3qzz:A, 3r0g:A, 3r0g:B, 2veb:A, 2vee:A, 2vee:B, 2vee:C, 2vee:D, 2vee:E, 2vee:F, 2vee:G, 2vee:H, 3zh0:A, 3zh0:B, 3zh0:C, 3zh0:D, 3zjh:A, 3zji:A, 3zji:B, 3zjj:A, 3zjj:B, 3zjj:C, 3zjl:A, 3zjl:B, 3zjm:A, 3zjm:B, 3zjm:C, 3zjn:A, 3zjn:B, 3zjo:A, 3zjo:B, 3zjp:A, 3zjq:A, 3zjq:B, 3zjr:A, 3zjs:A, 3zjs:B, 3zol:A, 3zol:B, 3zom:A, 3zom:B
12 2dc3:A 172 35 0.1449 0.0581 0.2857 8.9 3ag0:A, 4b3w:A, 4b3w:B, 2dc3:B, 1umo:A, 1umo:B, 1urv:A, 1urv:B, 1ury:A, 1ury:B, 1ut0:A, 1ut0:B, 1ux9:A, 1ux9:B, 1v5h:A
13 8hku:L141 86 16 0.1304 0.1047 0.5625 9.3 8hku:L142, 8hkv:L141, 8hkv:L142, 8hky:L141, 8hky:L142, 8hkz:L141, 8hkz:L142, 8hl1:L141, 8hl1:L142, 8hl2:L141, 8hl2:L142, 8hl3:L141, 8hl3:L142, 8hl4:L141, 8hl4:L142, 8hl5:L141, 8hl5:L142
14 2jig:B 195 21 0.1449 0.0513 0.4762 10.0 3gze:B, 3gze:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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