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BioLiP
>protein
GAMAIYPCGMCHKEVNDNDEAVFCESGCNFFFHRTCVGLTEAAFQMLNKEVFAEWCCDKCVS

The query sequence (length=62) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3zpv:1 62 62 1.0000 1.0000 1.0000 4.79e-42 3zpv:3, 3zpv:5, 3zpv:7, 3zpv:9, 3zpv:A, 3zpv:C, 3zpv:E, 3zpv:G, 3zpv:I, 3zpv:K, 3zpv:M, 3zpv:O, 3zpv:Q, 3zpv:S, 3zpv:U, 3zpv:W, 3zpv:Y
2 2vp7:A 66 58 0.4677 0.4394 0.5000 1.61e-19 2dx8:A, 2dx8:B, 2vpb:A, 2vpd:A, 2vpd:C, 2vpe:C, 2vpe:A, 2vpg:A, 2vpg:C, 2yyr:A, 2yyr:B
3 2xb1:C 97 57 0.4516 0.2887 0.4912 5.51e-19 4up0:A, 4up5:A, 2xb1:A
4 5wlf:A 60 46 0.3065 0.3167 0.4130 0.008 5wle:A
5 5c11:A 52 30 0.1774 0.2115 0.3667 0.015 3gl6:A, 2kgg:A, 2kgi:A
6 2ma5:A 61 46 0.2419 0.2459 0.3261 0.034
7 5z8l:A 204 44 0.2742 0.0833 0.3864 0.58 5z8n:A, 5z8n:B, 5z8n:C
8 1wem:A 76 32 0.1774 0.1447 0.3438 0.63 4l7x:A, 2m3h:A
9 7kua:A 149 19 0.1613 0.0671 0.5263 2.6
10 1x4i:A 70 32 0.1935 0.1714 0.3750 4.3 7zmx:A, 7zmx:B
11 5y20:A 52 42 0.2097 0.2500 0.3095 6.5
12 7ok0:P 47 45 0.1613 0.2128 0.2222 6.7 7oq4:P, 7oqy:P
13 2i7t:A 404 13 0.1129 0.0173 0.5385 8.9
14 2i7v:A 433 13 0.1129 0.0162 0.5385 8.9 8t1q:A, 8t1r:A
15 6v4x:H 499 13 0.1129 0.0140 0.5385 9.0 6m8q:A, 6m8q:B
16 1we9:A 64 42 0.2258 0.2188 0.3333 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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