Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GAHMAGGRSWCLRRVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKSLNGVWLN
RARLEPLRVYSIHQGDYIQLGVPLENKENAEYEYEVTEEDWETIYPCLSPKN

The query sequence (length=132) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2pie:A 132 132 1.0000 1.0000 1.0000 2.48e-97
2 6ar2:A 134 61 0.1591 0.1567 0.3443 0.010 6ar2:B
3 3elv:A 145 87 0.2121 0.1931 0.3218 0.13 3elv:B
4 6ks6:g 520 62 0.1591 0.0404 0.3387 0.13 6ks6:G, 4v81:C, 4v81:k, 4v8r:AG, 4v8r:Ag, 4v8r:BG, 4v8r:Bg, 4v94:C, 4v94:K, 4v94:c, 4v94:k, 7ylw:G, 7ylw:g, 7ylx:G, 7ylx:g, 7yly:G, 7yly:g
5 5xzv:A 375 56 0.1288 0.0453 0.3036 0.63 2a0t:A, 1g6g:A, 1g6g:B, 1j4p:A, 1j4q:A, 2jqi:A, 1k3n:A, 1k3q:A, 5xzv:B
6 5t2s:A 247 39 0.1061 0.0567 0.3590 0.74 5t2s:C
7 7txl:A 275 56 0.1364 0.0655 0.3214 1.4 7txk:A, 7txk:B, 7txl:B
8 8fhd:A 1294 31 0.0682 0.0070 0.2903 2.3
9 6c4u:B 128 70 0.1591 0.1641 0.3000 3.3 6c4u:A, 6c4u:C, 6c4u:D, 6c4u:F, 6c4u:E
10 3zyv:B 1262 32 0.0833 0.0087 0.3438 3.4 3zyv:A, 3zyv:C, 3zyv:D
11 1v1a:A 301 60 0.0985 0.0432 0.2167 4.6 1v1a:B, 1v1b:A, 1v1b:D, 1v1b:B, 1v1b:C
12 3rl5:A 279 31 0.0909 0.0430 0.3871 5.3 3rl3:A, 3rl4:A
13 8ffz:B 905 72 0.1515 0.0221 0.2778 6.1
14 3hhj:B 131 37 0.1061 0.1069 0.3784 7.7 3hhj:A
15 7eg0:B 567 77 0.1288 0.0300 0.2208 9.8 7eg0:D, 7eg1:B, 7eg1:D, 7eg4:D, 7eg4:B
16 3sfh:A 342 38 0.0758 0.0292 0.2632 9.8 3f07:C, 3sff:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218