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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GAFLDKPKMEKHNAQGQGNGLRYGLSSMQGWRVEMEDAHTAVIGLPSGLESWSFFAVYDGHAGSQVAKYCCEHLLDHITN
NQDFKGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGESRGLLCRNRKVHFFT
QDHKPSNPLEKERIQNAGGSVMIQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGI
WDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYKGSRDNMSVILICFPNAPKV

The query sequence (length=296) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1a6q:A 363 296 0.9966 0.8127 0.9966 0.0 6b67:A, 6b67:B, 6b67:C, 3fxj:A, 3fxk:A, 3fxl:A, 3fxm:A, 3fxo:A, 4ra2:A, 4raf:A, 4rag:A
2 2p8e:B 281 288 0.7635 0.8043 0.7847 4.53e-170 2p8e:A
3 2i0o:A 287 294 0.3649 0.3763 0.3673 1.04e-57
4 3ujk:A 298 300 0.3615 0.3591 0.3567 2.17e-44 3nmv:B, 3ujl:B
5 3nmn:D 276 288 0.3480 0.3732 0.3576 7.26e-44 3kdj:B, 3nmn:B
6 4oic:B 305 300 0.3547 0.3443 0.3500 6.30e-38
7 8aya:B 298 301 0.3446 0.3423 0.3389 8.28e-38 4ds8:B, 5jo2:B, 3kb3:B, 4lg5:B, 4lgb:B, 5mn0:B, 7mwn:B, 3nmt:B, 5or2:B, 5or6:B, 3qn1:B, 5vs5:B, 4wvo:B, 3zvu:B
8 3rt0:A 328 319 0.3682 0.3323 0.3417 3.11e-36 7avw:B, 8ay3:B, 8ay6:B, 8ay7:B, 8ay8:B, 8ay9:B, 5jo1:B, 4la7:B, 4lga:B, 3rt0:B, 3ujg:B, 5vr7:B, 5vro:B, 5vsq:B, 5vsr:B, 5vt7:B, 6zuc:B
9 4yzg:A 294 292 0.2736 0.2755 0.2774 3.30e-32 4yzg:B, 4yzh:A
10 5zcl:A 312 317 0.3345 0.3173 0.3123 8.20e-32 5gwo:A, 5gwo:B, 5gwp:A, 5gwp:B, 5zcg:A, 5zcg:B, 5zch:A, 5zch:B, 5zcl:B, 5zcu:A, 5zcu:B
11 4n0g:A 267 242 0.2973 0.3296 0.3636 8.80e-32 4n0g:B
12 6ak7:A 257 276 0.2939 0.3385 0.3152 1.36e-29 4da1:A, 2iq1:A
13 8t2j:A 339 319 0.3277 0.2861 0.3041 4.45e-24
14 4jnd:A 408 291 0.2770 0.2010 0.2818 7.33e-21
15 7kpr:A 403 277 0.2264 0.1663 0.2419 5.07e-11 7kpr:B, 7l4i:A, 7l4i:B, 7l4j:A, 7l4j:B, 7n0z:A, 7n0z:B
16 2i44:A 317 306 0.2399 0.2240 0.2320 5.62e-10 2i44:B, 2i44:C
17 6v0t:A 402 156 0.1520 0.1119 0.2885 1.20e-06 3mq3:A, 2pnq:A, 2pnq:B
18 2pom:A 355 191 0.1419 0.1183 0.2199 1.71e-04
19 2pk0:A 247 164 0.1250 0.1498 0.2256 0.003 2pk0:B, 2pk0:C, 2pk0:D
20 6ihr:A 257 192 0.1284 0.1479 0.1979 0.034 5f1m:A, 6ihl:A, 6ihs:A, 6iht:A, 6ihw:A
21 6ihv:A 221 145 0.1047 0.1403 0.2138 0.070 6ihu:A
22 1txo:B 236 143 0.1081 0.1356 0.2238 0.61 2cm1:A, 1txo:A
23 1vcr:A 101 46 0.0574 0.1683 0.3696 2.1
24 2m5c:A 227 98 0.0878 0.1145 0.2653 3.5 1bc2:A, 1bc2:B, 2bc2:A, 2bc2:B, 3bc2:A, 2bfk:A, 2bfk:B, 2bfl:A, 2bfl:B, 2bfz:A, 2bfz:B, 2bg2:A, 2bg2:B, 2bg6:A, 2bg6:B, 2bg7:A, 2bg7:B, 2bg8:A, 2bg8:B, 2bga:A, 2bga:B, 1bmc:A, 1bvt:A, 4c09:A, 4c1c:A, 4c1h:A, 6dja:A, 1dxk:A, 6eum:A, 6ewe:A, 6f2n:A, 3fcz:A, 3fcz:B, 5fqa:A, 5fqb:A, 3i11:A, 3i13:A, 3i14:A, 3i15:A, 5jmx:A, 3knr:A, 3knr:B, 3knr:C, 3knr:D, 3kns:A, 3kns:B, 3kns:C, 3kns:D, 2m5d:A, 4nq4:A, 4nq5:A, 4nq6:A, 2nxa:A, 2nyp:A, 2nze:A, 2nze:B, 2nzf:A, 4tyt:A, 2uyx:A, 5w8w:A
25 7oui:S 216 52 0.0574 0.0787 0.3269 4.5 3jcu:S, 3jcu:s, 5mdx:S, 5mdx:s, 7oui:s
26 3kpf:A 467 49 0.0507 0.0321 0.3061 5.6 1b37:A, 1b37:B, 1b37:C, 1b5q:A, 1b5q:B, 1b5q:C, 1h81:A, 1h81:B, 1h81:C, 1h82:A, 1h82:B, 1h82:C, 1h83:A, 1h83:B, 1h83:C, 1h84:A, 1h84:B, 1h84:C, 1h86:A, 1h86:B, 1h86:C, 3kpf:B, 3ku9:A, 3ku9:B, 3l1r:A, 3l1r:B
27 1bdm:B 327 40 0.0473 0.0428 0.3500 7.6 1bdm:A, 1bmd:A, 1bmd:B, 2cvq:A, 2cvq:B, 1wze:A, 1wze:B, 1wzi:A, 1wzi:B, 1y7t:A, 1y7t:B
28 8fkp:NM 182 22 0.0304 0.0495 0.4091 7.6 8fkr:NM, 8fkt:NM, 8fkv:NM
29 6jr9:A 269 214 0.1520 0.1673 0.2103 8.1 5c7y:A, 5c7y:B, 5c81:A, 5c81:B, 5c8x:A, 5c8x:B, 5c8z:A, 5c8z:B, 5ie4:A, 5ie4:B, 5ie5:A, 5ie5:B, 5ie6:A, 5ie6:B, 5ie7:A, 5ie7:B, 6jqz:A, 6jqz:B, 6jr2:A, 6jr2:B, 6jr5:A, 6jr5:B, 6jr9:B, 6jra:A, 6jra:B, 6jrb:A, 6jrb:B, 6jrc:A, 6jrc:B, 6jrd:A, 6jrd:B, 3wzm:A, 3wzm:B, 3wzm:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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