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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GADLTPCAENPAFQALAKNARNTTADPQSGQKRFERYSQALCGPEGYPHLIVDGRLDRAGDFLIPSILFLYIAGWIGWVG
RAYLQAIKKDSDTEQKEIQLDLGIALPIIATGFAWPAAAVKELLSGELTAKDSEITVSPR

The query sequence (length=140) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6jeo:bF 141 140 1.0000 0.9929 1.0000 2.15e-101 6jeo:aF, 6jeo:cF, 6jeo:dF, 6k61:F, 6k61:f, 6tcl:F1, 6tcl:F2, 6tcl:F, 6tcl:FF, 7y3f:F
2 7qco:F 141 140 0.7357 0.7305 0.7357 6.06e-74 7qco:O, 7qco:o, 7qco:f
3 4fe1:F 141 139 0.7000 0.6950 0.7050 3.24e-70 7fix:F1, 7fix:F2, 7fix:F3, 1jb0:F, 6k33:bF, 6k33:aF, 6k33:cF, 7m75:F, 7m76:F, 7m78:F, 3pcq:F, 6pfy:Q, 6pfy:F, 6pfy:d, 6pgk:Q, 6pgk:F, 6pgk:d, 6tra:F, 6trc:F, 6trc:f, 6trc:6, 6trd:F, 6trd:f, 6trd:6, 5zf0:F1, 5zf0:F2, 5zf0:F3, 5zf0:F4, 5zf0:F6, 5zf0:F5
4 6vpv:F 141 139 0.6500 0.6454 0.6547 1.24e-67 6vpv:f, 6vpv:6
5 6hqb:F 143 139 0.6214 0.6084 0.6259 3.61e-62 8am5:f, 8asl:f, 8asp:f, 4kt0:F, 6nwa:F, 6nwa:f, 6nwa:Q, 5oy0:F, 5oy0:f, 5oy0:6, 7umh:F, 7umh:Q, 7umh:f, 6uzv:F, 6uzv:6, 6uzv:f
6 6kif:F 136 139 0.6357 0.6544 0.6403 6.92e-57 6kif:R, 6kif:j, 6kig:F, 6kig:R, 6kig:j
7 7dr0:F 161 159 0.5143 0.4472 0.4528 1.68e-43 7dr1:F, 7dr2:aF, 7dr2:bF, 7dr2:cF, 7dr2:dF
8 7y7b:F 160 159 0.5286 0.4625 0.4654 1.68e-42 7y8a:F
9 8wey:F 158 155 0.5000 0.4430 0.4516 7.46e-42
10 7blz:F 155 154 0.4714 0.4258 0.4286 6.10e-40 6fos:F, 5zgb:F, 5zgh:F
11 8wm6:F 161 159 0.4786 0.4161 0.4214 9.52e-39 8wmj:F, 8wmv:F, 8wmw:F
12 6l4u:F 161 157 0.4571 0.3975 0.4076 1.54e-38
13 8htu:F 161 159 0.4929 0.4286 0.4340 2.43e-38 7ksq:F, 7kux:F, 6l35:F, 7xqp:F
14 7y5e:FN 158 131 0.4571 0.4051 0.4885 3.22e-38 7y5e:F2, 7y7a:F7, 7y7a:Fo
15 7lx0:Q 135 137 0.4571 0.4741 0.4672 1.99e-36 7lx0:f, 7lx0:F, 6pnj:Q, 6pnj:f, 6pnj:F
16 5l8r:F 154 151 0.4714 0.4286 0.4371 2.70e-36 7dkz:F, 4rku:F, 4y28:F, 6yac:F, 6yez:F, 6zoo:F, 6zxs:F
17 7f4v:aF 151 148 0.4500 0.4172 0.4257 3.46e-36 7f4v:bF, 7f4v:cF
18 5zji:F 158 154 0.4500 0.3987 0.4091 1.39e-34
19 6ly5:f 162 146 0.4714 0.4074 0.4521 1.98e-34 3lw5:F, 2o01:F, 2wsc:F, 2wse:F, 2wsf:F, 4xk8:F, 4xk8:f
20 7yca:F 165 159 0.4857 0.4121 0.4277 1.34e-33
21 7wfe:BF 154 149 0.4500 0.4091 0.4228 2.06e-33 8j6z:F, 8j7a:F, 8j7b:F, 7wfd:AF, 7wg5:AF, 7wg5:BF, 8wgh:F
22 8bcv:F 158 154 0.4429 0.3924 0.4026 5.99e-33 7ew6:F, 7ewk:F, 7f9o:F, 7f9o:j
23 7dwq:F 103 101 0.4071 0.5534 0.5644 1.97e-32
24 7a4p:F 165 163 0.4571 0.3879 0.3926 2.35e-31 6zzx:F, 6zzy:F
25 8cmo:F 165 163 0.4643 0.3939 0.3988 4.04e-31
26 7bgi:F 165 163 0.4643 0.3939 0.3988 3.77e-30 7blx:F, 7d0j:F, 7dz7:F, 7dz8:F, 8h2u:F, 6ijj:F, 6ijo:F, 6jo5:F, 6jo6:F, 7r3k:F, 7wyi:F, 7wzn:F, 7zq9:F, 7zqc:F, 7zqd:F, 7zqd:F2
27 6igz:F 163 161 0.4500 0.3865 0.3913 4.84e-30
28 6qph:F 163 161 0.4500 0.3865 0.3913 8.06e-30 6rhz:F, 6sl5:F, 6yxr:F
29 7s3d:F 124 135 0.4286 0.4839 0.4444 1.73e-28 7s3d:Q, 7s3d:f
30 4l6v:F 125 94 0.3571 0.4000 0.5319 2.14e-28 8am5:j, 8asl:j, 8asp:j, 6hqb:J, 4kt0:J, 4l6v:f, 4l6v:6, 6nwa:J, 6nwa:j, 6nwa:S, 5oy0:J, 5oy0:j, 5oy0:7, 7umh:J, 7umh:S, 7umh:j, 6uzv:J, 6uzv:j, 6uzv:7
31 8jjr:f 169 106 0.3000 0.2485 0.3962 1.00e-22
32 8jze:f 184 151 0.3643 0.2772 0.3377 4.24e-22 8jzf:f
33 8jw0:f 185 156 0.3286 0.2486 0.2949 2.64e-19
34 8q74:A 783 71 0.1143 0.0204 0.2254 2.2 8q75:A, 8q76:A
35 7ase:C 696 20 0.0857 0.0172 0.6000 3.6
36 2am1:A 454 62 0.1286 0.0396 0.2903 5.1 2am2:A, 3zm5:A, 3zm6:A
37 8pzv:B 369 34 0.1000 0.0379 0.4118 7.0 8pzu:B, 4xga:A
38 7msw:A 635 20 0.0714 0.0157 0.5000 9.0 7exm:A, 7exm:B, 7exm:C, 7exm:D, 7msx:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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