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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GADGVGNSSGNWHCDSQWLGDRVITTSTRTWALPTYNNHLYKQISSQSGASNDNHYFGYSTPWGYFDFNRFHCHFSPRDW
QRLINNNWGFRPKKLSFKLFNIQVKEVTQNDGTTTIANNLTSTVQVFTDSEYQLPYVLGSAHQGCLPPFPADVFMVPQYG
YLTLNNGSQAVGRSSFYCLEYFPSQMLRTGNNFQFSYTFEDVPFHSSYAHSQSLDRLMNPLIDQYLYYLNRTQGTTSGTT
NQSRLLFSQAGPQSMSLQARNWLPGPCYRQQRLSKTANDNNNSNFPWTAASKYHLNGRDSLVNPGPAMASHKDDEEKFFP
MHGNLIFGKEGTTASNAELDNVMITDEEEIRTTNPVATEQYGTVANNLQSSNTAPTTRTVNDQGALPGMVWQDRDVYLQG
PIWAKIPHTDGHFHPSPLMGGFGLKHPPPQIMIKNTPVPANPPTTFSPAKFASFITQYSTGQVSVEIEWELQKENSKRWN
PEIQYTSNYNKSVNVDFTVDTNGVYSEPRPIGTRYLTRNL

The query sequence (length=520) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3kic:A 520 520 1.0000 1.0000 1.0000 0.0 3kic:B, 3kic:C, 3kic:D, 3kic:E, 3kic:F, 3kic:G, 3kic:H, 3kic:I, 3kic:J, 3kic:K, 3kic:L, 3kic:M, 3kic:N, 3kic:O, 3kic:P, 3kic:Q, 3kic:R, 3kic:S, 3kic:T, 3kie:A, 3kie:B, 3kie:C, 3kie:D, 3kie:E, 3kie:F, 3kie:G, 3kie:H, 3kie:I, 3kie:J, 3kie:K, 3kie:L, 3kie:M, 3kie:N, 3kie:O, 3kie:P, 3kie:Q, 3kie:R, 3kie:S, 3kie:T
2 6u0r:A 527 528 0.8923 0.8805 0.8788 0.0 8fyw:A, 8fyw:B, 8fyw:C, 8fyw:D, 8fyw:E, 8fyw:F, 8fyw:G, 8fyw:H, 8fyw:I, 8fyw:J, 8fyw:K, 8fyw:L, 8fyw:M, 8fyw:N, 8fyw:O, 8fyw:P, 8fyw:Q, 8fyw:R, 8fyw:S, 8fyw:T, 8fyw:U, 8fyw:V, 8fyw:W, 8fyw:X, 8fyw:Y, 8fyw:Z, 8fyw:a, 8fyw:b, 8fyw:c, 8fyw:d, 8fyw:e, 8fyw:f, 8fyw:g, 8fyw:h, 8fyw:i, 8fyw:j, 8fyw:k, 8fyw:l, 8fyw:m, 8fyw:n, 8fyw:o, 8fyw:p, 8fyw:q, 8fyw:r, 8fyw:s, 8fyw:t, 8fyw:u, 8fyw:v, 8fyw:w, 8fyw:x, 8fyw:y, 8fyw:z, 8fyw:1, 8fyw:2, 8fyw:3, 8fyw:4, 8fyw:5, 8fyw:6, 8fyw:7, 8fyw:8, 3j4p:A, 7kfr:A, 7l6h:A, 7l6h:B, 7l6h:C, 7l6h:D, 7l6h:E, 7l6h:F, 7l6h:G, 7l6h:H, 7l6h:I, 7l6h:J, 7l6h:K, 7l6h:L, 7l6h:M, 7l6h:N, 7l6h:O, 7l6h:P, 7l6h:Q, 7l6h:R, 7l6h:S, 7l6h:T, 7l6h:U, 7l6h:V, 7l6h:W, 7l6h:X, 7l6h:Y, 7l6h:Z, 7l6h:a, 7l6h:b, 7l6h:c, 7l6h:d, 7l6h:e, 7l6h:f, 7l6h:g, 7l6h:h, 7l6h:i, 7l6h:j, 7l6h:k, 7l6h:l, 7l6h:m, 7l6h:n, 7l6h:o, 7l6h:p, 7l6h:q, 7l6h:r, 7l6h:s, 7l6h:t, 7l6h:u, 7l6h:v, 7l6h:w, 7l6h:x, 7l6h:y, 7l6h:z, 7l6h:1, 7l6h:2, 7l6h:3, 7l6h:4, 7l6h:5, 7l6h:6, 7l6h:7, 7l6h:8, 6u0r:B, 6u0r:C, 6u0r:D, 6u0r:E, 6u0r:F, 6u0r:G, 6u0r:H, 6u0r:I, 6u0r:J, 6u0r:K, 6u0r:L, 6u0r:M, 6u0r:N, 6u0r:O, 6u0r:P, 6u0r:Q, 6u0r:R, 6u0r:S, 6u0r:T, 6u0r:U, 6u0r:V, 6u0r:W, 6u0r:X, 6u0r:Y, 6u0r:Z, 6u0r:a, 6u0r:b, 6u0r:c, 6u0r:d, 6u0r:e, 6u0r:f, 6u0r:g, 6u0r:h, 6u0r:i, 6u0r:j, 6u0r:k, 6u0r:l, 6u0r:m, 6u0r:n, 6u0r:o, 6u0r:p, 6u0r:q, 6u0r:r, 6u0r:s, 6u0r:t, 6u0r:u, 6u0r:v, 6u0r:w, 6u0r:x, 6u0r:y, 6u0r:z, 6u0r:1, 6u0r:2, 6u0r:3, 6u0r:4, 6u0r:5, 6u0r:6, 6u0r:7, 6u0r:8, 5uf6:A
3 5egc:A 520 521 0.8577 0.8577 0.8560 0.0 3ng9:A, 3ng9:B, 3ng9:C, 3ng9:D, 3ng9:E, 3ng9:F, 3ng9:G, 3ng9:H, 3ng9:I, 3ng9:J, 3oah:A
4 6v10:A 521 522 0.8462 0.8445 0.8429 0.0 7ltm:A, 7ltm:B, 7ltm:C, 7ltm:D, 7ltm:E, 7ltm:F, 7ltm:G, 7ltm:H, 7ltm:I, 7ltm:J, 7ltm:K, 7ltm:L, 7ltm:M, 7ltm:N, 7ltm:O, 7ltm:P, 7ltm:Q, 7ltm:R, 7ltm:S, 7ltm:T, 7ltm:U, 7ltm:V, 7ltm:W, 7ltm:X, 7ltm:Y, 7ltm:Z, 7ltm:a, 7ltm:b, 7ltm:c, 7ltm:d, 7ltm:e, 7ltm:f, 7ltm:g, 7ltm:h, 7ltm:i, 7ltm:j, 7ltm:k, 7ltm:l, 7ltm:m, 7ltm:n, 7ltm:o, 7ltm:p, 7ltm:q, 7ltm:r, 7ltm:s, 7ltm:t, 7ltm:u, 7ltm:v, 7ltm:w, 7ltm:x, 7ltm:y, 7ltm:z, 7ltm:1, 7ltm:2, 7ltm:3, 7ltm:4, 7ltm:5, 7ltm:6, 7ltm:7, 7ltm:8, 3ra4:A, 3ra8:A, 3ra9:A, 3raa:A, 7rl1:A, 7rl1:B, 7rl1:C, 7rl1:D, 7rl1:E, 7rl1:F, 7rl1:G, 7rl1:H, 7rl1:I, 7rl1:J, 7rl1:K, 7rl1:L, 7rl1:M, 7rl1:N, 7rl1:O, 7rl1:P, 7rl1:Q, 7rl1:R, 7rl1:S, 7rl1:T, 7rl1:U, 7rl1:V, 7rl1:W, 7rl1:X, 7rl1:Y, 7rl1:Z, 7rl1:a, 7rl1:b, 7rl1:c, 7rl1:d, 7rl1:e, 7rl1:f, 7rl1:g, 7rl1:h, 7rl1:i, 7rl1:j, 7rl1:k, 7rl1:l, 7rl1:m, 7rl1:n, 7rl1:o, 7rl1:p, 7rl1:q, 7rl1:r, 7rl1:s, 7rl1:t, 7rl1:u, 7rl1:v, 7rl1:w, 7rl1:x, 7rl1:y, 7rl1:z, 7rl1:1, 7rl1:2, 7rl1:3, 7rl1:4, 7rl1:5, 7rl1:6, 7rl1:7, 7rl1:8, 6v10:B, 6v10:C, 6v10:D, 6v10:E, 6v10:F, 6v10:G, 6v10:H, 6v10:I, 6v10:J, 6v10:K, 6v10:L, 6v10:M, 6v10:N, 6v10:O, 6v10:P, 6v10:Q, 6v10:R, 6v10:S, 6v10:T, 6v10:U, 6v10:V, 6v10:W, 6v10:X, 6v10:Y, 6v10:Z, 6v10:a, 6v10:b, 6v10:c, 6v10:d, 6v10:e, 6v10:f, 6v10:g, 6v10:h, 6v10:i, 6v10:j, 6v10:k, 6v10:l, 6v10:m, 6v10:n, 6v10:o, 6v10:p, 6v10:q, 6v10:r, 6v10:s, 6v10:t, 6v10:u, 6v10:v, 6v10:w, 6v10:x, 6v10:y, 6v10:z, 6v10:1, 6v10:2, 6v10:3, 6v10:4, 6v10:5, 6v10:6, 6v10:7, 6v10:8, 6v1g:A, 6v1g:B, 6v1g:C, 6v1g:D, 6v1g:E, 6v1g:F, 6v1g:G, 6v1g:H, 6v1g:I, 6v1g:J, 6v1g:K, 6v1g:L, 6v1g:M, 6v1g:N, 6v1g:O, 6v1g:P, 6v1g:Q, 6v1g:R, 6v1g:S, 6v1g:T, 6v1g:U, 6v1g:V, 6v1g:W, 6v1g:X, 6v1g:Y, 6v1g:Z, 6v1g:a, 6v1g:b, 6v1g:c, 6v1g:d, 6v1g:e, 6v1g:f, 6v1g:g, 6v1g:h, 6v1g:i, 6v1g:j, 6v1g:k, 6v1g:l, 6v1g:m, 6v1g:n, 6v1g:o, 6v1g:p, 6v1g:q, 6v1g:r, 6v1g:s, 6v1g:t, 6v1g:u, 6v1g:v, 6v1g:w, 6v1g:x, 6v1g:y, 6v1g:z, 6v1g:1, 6v1g:2, 6v1g:3, 6v1g:4, 6v1g:5, 6v1g:6, 6v1g:7, 6v1g:8, 6v1z:A, 6v1z:B, 6v1z:C, 6v1z:D, 6v1z:E, 6v1z:F, 6v1z:G, 6v1z:H, 6v1z:I, 6v1z:J, 6v1z:K, 6v1z:L, 6v1z:M, 6v1z:N, 6v1z:O, 6v1z:P, 6v1z:Q, 6v1z:R, 6v1z:S, 6v1z:T, 6v1z:U, 6v1z:V, 6v1z:W, 6v1z:X, 6v1z:Y, 6v1z:Z, 6v1z:a, 6v1z:b, 6v1z:c, 6v1z:d, 6v1z:e, 6v1z:f, 6v1z:g, 6v1z:h, 6v1z:i, 6v1z:j, 6v1z:k, 6v1z:l, 6v1z:m, 6v1z:n, 6v1z:o, 6v1z:p, 6v1z:q, 6v1z:r, 6v1z:s, 6v1z:t, 6v1z:u, 6v1z:v, 6v1z:w, 6v1z:x, 6v1z:y, 6v1z:z, 6v1z:1, 6v1z:2, 6v1z:3, 6v1z:4, 6v1z:5, 6v1z:6, 6v1z:7, 6v1z:8
5 7l5u:A 520 521 0.8327 0.8327 0.8311 0.0 7l5u:B, 7l5u:C, 7l5u:D, 7l5u:E, 7l5u:F, 7l5u:G, 7l5u:H, 7l5u:I, 7l5u:J, 7l5u:K, 7l5u:L, 7l5u:M, 7l5u:N, 7l5u:O, 7l5u:P, 7l5u:Q, 7l5u:R, 7l5u:S, 7l5u:T, 7l5u:U, 7l5u:V, 7l5u:W, 7l5u:X, 7l5u:Y, 7l5u:Z, 7l5u:a, 7l5u:b, 7l5u:c, 7l5u:d, 7l5u:e, 7l5u:f, 7l5u:g, 7l5u:h, 7l5u:i, 7l5u:j, 7l5u:k, 7l5u:l, 7l5u:m, 7l5u:n, 7l5u:o, 7l5u:p, 7l5u:q, 7l5u:r, 7l5u:s, 7l5u:t, 7l5u:u, 7l5u:v, 7l5u:w, 7l5u:x, 7l5u:y, 7l5u:z, 7l5u:1, 7l5u:2, 7l5u:3, 7l5u:4, 7l5u:5, 7l5u:6, 7l5u:7, 7l5u:8
6 4rso:A 520 522 0.8308 0.8308 0.8276 0.0
7 8tey:A 519 523 0.6250 0.6262 0.6214 0.0 8tey:G, 8tey:B, 8tey:J, 8tey:C, 8tey:b, 8tey:D, 8tey:N, 8tey:E, 8tey:Q, 8tey:F, 8tey:I, 8tey:H, 8tey:W, 8tey:L, 8tey:K, 8tey:a, 8tey:M, 8tey:P, 8tey:O, 8tey:m, 8tey:R, 8tey:S, 8tey:U, 8tey:T, 8tey:d, 8tey:V, 8tey:e, 8tey:Y, 8tey:X, 8tey:Z, 8tey:4, 8tey:8, 8tey:c, 8tey:o, 8tey:l, 8tey:f, 8tey:h, 8tey:g, 8tey:i, 8tey:j, 8tey:k, 8tey:n, 8tey:p, 8tey:q, 8tey:r, 8tey:s, 8tey:t, 8tey:u, 8tey:v, 8tey:w, 8tey:x, 8tey:y, 8tey:z, 8tey:1, 8tey:2, 8tey:3, 8tey:5, 8tey:6, 8tey:7
8 6wft:A 513 527 0.6308 0.6394 0.6224 0.0 6wft:B, 6wft:C, 6wft:D, 6wft:E, 6wft:F, 6wft:G, 6wft:H, 6wft:I, 6wft:J, 6wft:K, 6wft:L, 6wft:M, 6wft:N, 6wft:O, 6wft:P, 6wft:Q, 6wft:R, 6wft:S, 6wft:T, 6wft:U, 6wft:V, 6wft:W, 6wft:X, 6wft:Y, 6wft:Z, 6wft:a, 6wft:b, 6wft:c, 6wft:d, 6wft:e, 6wft:f, 6wft:g, 6wft:h, 6wft:i, 6wft:j, 6wft:k, 6wft:l, 6wft:m, 6wft:n, 6wft:o, 6wft:p, 6wft:q, 6wft:r, 6wft:s, 6wft:t, 6wft:u, 6wft:v, 6wft:w, 6wft:x, 6wft:y, 6wft:z, 6wft:1, 6wft:2, 6wft:3, 6wft:4, 6wft:5, 6wft:6, 6wft:7, 6wft:8
9 7l6e:A 521 529 0.6154 0.6142 0.6049 0.0 4iov:A, 7l6e:B, 7l6e:C, 7l6e:D, 7l6e:E, 7l6e:F, 7l6e:G, 7l6e:H, 7l6e:I, 7l6e:J, 7l6e:K, 7l6e:L, 7l6e:M, 7l6e:N, 7l6e:O, 7l6e:P, 7l6e:Q, 7l6e:R, 7l6e:S, 7l6e:T, 7l6e:U, 7l6e:V, 7l6e:W, 7l6e:X, 7l6e:Y, 7l6e:Z, 7l6e:a, 7l6e:b, 7l6e:c, 7l6e:d, 7l6e:e, 7l6e:f, 7l6e:g, 7l6e:h, 7l6e:i, 7l6e:j, 7l6e:k, 7l6e:l, 7l6e:m, 7l6e:n, 7l6e:o, 7l6e:p, 7l6e:q, 7l6e:r, 7l6e:s, 7l6e:t, 7l6e:u, 7l6e:v, 7l6e:w, 7l6e:x, 7l6e:y, 7l6e:z, 7l6e:1, 7l6e:2, 7l6e:3, 7l6e:4, 7l6e:5, 7l6e:6, 7l6e:7, 7l6e:8
10 2g8g:A 524 534 0.6192 0.6145 0.6030 0.0 7thr:A
11 7l6a:A 521 528 0.5962 0.5950 0.5871 0.0 7l6a:B, 7l6a:C, 7l6a:D, 7l6a:E, 7l6a:F, 7l6a:G, 7l6a:H, 7l6a:I, 7l6a:J, 7l6a:K, 7l6a:L, 7l6a:M, 7l6a:N, 7l6a:O, 7l6a:P, 7l6a:Q, 7l6a:R, 7l6a:S, 7l6a:T, 7l6a:U, 7l6a:V, 7l6a:W, 7l6a:X, 7l6a:Y, 7l6a:Z, 7l6a:a, 7l6a:b, 7l6a:c, 7l6a:d, 7l6a:e, 7l6a:f, 7l6a:g, 7l6a:h, 7l6a:i, 7l6a:j, 7l6a:k, 7l6a:l, 7l6a:m, 7l6a:n, 7l6a:o, 7l6a:p, 7l6a:q, 7l6a:r, 7l6a:s, 7l6a:t, 7l6a:u, 7l6a:v, 7l6a:w, 7l6a:x, 7l6a:y, 7l6a:z, 7l6a:1, 7l6a:2, 7l6a:3, 7l6a:4, 7l6a:5, 7l6a:6, 7l6a:7, 7l6a:8
12 4g0r:A 554 187 0.1058 0.0993 0.2941 2.81e-09
13 1mvm:A 549 175 0.0904 0.0856 0.2686 4.59e-06 1z1c:A
14 9cuz:A 537 179 0.0923 0.0894 0.2682 1.35e-05 9cuz:B, 9cuz:C, 9cuz:D, 9cuz:E, 9cuz:F, 9cuz:G, 9cuz:H, 9cuz:I, 9cuz:J, 9cuz:K, 9cuz:L, 9cuz:M, 9cuz:N, 9cuz:O, 9cuz:P, 9cuz:Q, 9cuz:R, 9cuz:S, 9cuz:T, 9cuz:U, 9cuz:V, 9cuz:W, 9cuz:X, 9cuz:Y, 9cuz:Z, 9cuz:a, 9cuz:b, 9cuz:c, 9cuz:d, 9cuz:e, 9cuz:f, 9cuz:g, 9cuz:h, 9cuz:i, 9cuz:j, 9cuz:k, 9cuz:l, 9cuz:m, 9cuz:n, 9cuz:o, 9cuz:p, 9cuz:q, 9cuz:r, 9cuz:s, 9cuz:t, 9cuz:u, 9cuz:v, 9cuz:w, 9cuz:x, 9cuz:y, 9cuz:z, 9cuz:1, 9cuz:2, 9cuz:3, 9cuz:4, 9cuz:5, 9cuz:6, 9cuz:7, 9cuz:8
15 4dpv:Z 559 222 0.1000 0.0930 0.2342 1.14e-04 1c8d:A, 1c8f:A, 1c8g:A, 1ijs:P, 1p5w:A, 4qyk:K, 4qyk:V, 4qyk:E, 4qyk:J, 4qyk:S, 4qyk:B, 4qyk:c, 4qyk:W, 4qyk:H, 4qyk:I, 4qyk:T, 4qyk:L, 4qyk:M, 4qyk:C, 4qyk:R, 4qyk:A, 4qyk:b, 4qyk:Y, 4qyk:d, 4qyk:F
16 5anb:K 1120 85 0.0327 0.0152 0.2000 1.4 5anc:K
17 4a0c:F 80 36 0.0250 0.1625 0.3611 5.3 8ij1:R, 7shk:R
18 5kjw:A 425 100 0.0423 0.0518 0.2200 8.3 5kjw:B
19 2lgv:A 100 36 0.0250 0.1300 0.3611 8.5 4a0c:D, 8b3g:R, 8b3i:R, 7b5l:R, 7b5m:R, 7b5n:R, 7b5s:R, 8cdk:R, 3dpl:R, 3dqv:R, 3dqv:Y, 4f52:B, 4f52:D, 8gq6:E, 8gq6:D, 8h33:D, 8h33:K, 8h33:L, 8h33:E, 8h34:R, 8h34:Q, 8h34:E, 8h34:D, 8h34:L, 8h34:K, 8h35:E, 8h35:D, 8h35:L, 8h35:K, 8h35:R, 8h35:Q, 8h35:W, 8h35:X, 8h36:E, 8h36:D, 8h37:E, 8h37:D, 8h37:R, 8h37:Q, 8h38:R, 8h3a:R, 8h3f:R, 8h3q:E, 8h3r:E, 8h3r:D, 2hye:D, 8jaq:R, 8jaq:V, 8jas:R, 8jas:V, 8jav:R, 8jav:V, 1ldj:B, 1ldk:C, 5n4w:R, 8or0:B, 8or2:B, 8or3:B, 4p5o:B, 4p5o:D, 7plo:T, 8pql:K, 8q7h:C, 8q7h:D, 8q7r:R, 8qu8:E, 8r5h:R, 6r7i:R, 6r7n:R, 8rhz:C, 8rhz:D, 3rtr:B, 3rtr:D, 3rtr:F, 3rtr:H, 8rwz:R, 8rx0:R, 6ttu:R, 1u6g:B, 8wqa:J, 8wqa:I, 8wqb:I, 8wqb:E, 8wqc:F, 8wqc:J, 8wqe:J, 8wqe:I, 8wqf:I, 8wqf:E, 8wqg:F, 8wqg:J, 8wqh:J, 8wqh:B, 7z8b:R, 7z8r:R, 7z8t:R, 7z8v:R, 7zbz:R

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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