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BioLiP
>protein
GAAYHEWKMALFKPADVILDPDTANAILLVSEDQRSVQRAEEPRDLPDNPERFEWHYCVLGCENFTSGRHYWEVEVGDRK
EWHIGVCSKNVERKKGWVKMTPENGYWTMGLTDGNKYRALTEPRTNLKLPEPPRKVGIFLDYETGEISFYNATDGSHIYT
FPHASFSEPLYPVFRILTLEPTALTICPI

The query sequence (length=189) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6j0k:A 191 189 1.0000 0.9895 1.0000 1.70e-143 6j0g:A, 6j0g:B, 6j0g:C, 6j0g:D, 6j0k:B
2 8ixv:A 187 187 0.8624 0.8717 0.8717 4.50e-123 8ize:A, 8izg:A, 6j06:A, 6j06:C, 6j06:B, 8jyc:C, 8jyc:D, 8jye:C, 8jye:D, 4n7u:A, 5zxk:A
3 8jya:B 191 186 0.7884 0.7801 0.8011 3.59e-114 8hjt:C, 8hjt:D, 8jy9:A, 8jy9:B, 8jyf:B
4 8hjt:A 197 178 0.5132 0.4924 0.5449 7.86e-62 8hjt:B
5 8igt:A 208 182 0.4868 0.4423 0.5055 6.33e-56 8jyc:A, 8jyc:B, 8jye:A, 8jye:B
6 8pd6:A 181 170 0.4709 0.4917 0.5235 1.23e-51
7 4cg4:C 376 179 0.4497 0.2261 0.4749 3.35e-51 4cg4:D, 4cg4:E, 4cg4:F
8 7ovx:A 174 165 0.3757 0.4080 0.4303 5.16e-38 8a5l:A, 8a5m:A, 8a5m:B, 8a8x:A, 8a8x:C, 7ow2:A, 7ow2:B, 7ow2:C, 7ow2:D, 8r5b:A, 8r5b:B, 8r5c:A, 7w0q:A, 7w0s:B, 7w0s:C, 7w0s:E, 7w0t:F, 7w0t:B, 7w0t:C, 7x6y:A, 7x6z:A, 7x70:A
9 7xyz:B 456 169 0.2857 0.1184 0.3195 1.58e-23 7xv2:A, 7xyy:A, 7xyy:B, 7xyz:A, 7xyz:C, 7xyz:D, 7xz0:A, 7xz0:B, 7xz1:A, 7xz1:B, 7xz2:A, 7xz2:B, 7xz2:C, 7xz2:D
10 7xt2:B 388 168 0.2698 0.1314 0.3036 4.64e-23 7xt2:A
11 4b3n:A 557 163 0.2963 0.1005 0.3436 8.07e-23 4b3n:B
12 3oix:A 310 87 0.1270 0.0774 0.2759 0.14 3oix:B, 3oix:C, 3oix:D
13 2ihs:A 203 182 0.2328 0.2167 0.2418 0.46 2ihs:B
14 5ul4:A 729 67 0.0952 0.0247 0.2687 1.1 5ul3:A
15 2bh2:A 418 52 0.1164 0.0526 0.4231 1.8 2bh2:B, 1uwv:A
16 8gy2:A 723 28 0.0635 0.0166 0.4286 2.8
17 4gw9:A 628 29 0.0635 0.0191 0.4138 5.6 4gw9:B, 4gw9:C, 4gw9:D, 5oy5:A, 5vik:A, 5viq:A, 5viv:A, 4xtq:A
18 4v5k:AY 97 21 0.0476 0.0928 0.4286 5.8 4udm:B
19 5hiw:A 391 39 0.0741 0.0358 0.3590 8.6
20 4iil:A 314 50 0.0741 0.0446 0.2800 9.3
21 8pr4:Y 375 32 0.0688 0.0347 0.4062 9.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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