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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
FYLRNFNNWMKSVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDS
EYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRLE
ASETESFGNEIYTVKFQKKGDYPLFGCKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTFLEFYEEKIKNNENK
MLLKRMGLGCLSKSEWEATSIYLVFAFEKQQ

The query sequence (length=271) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5e8j:A 310 307 0.9926 0.8677 0.8762 0.0 3bgv:A, 3bgv:B, 3bgv:C, 3bgv:D, 5e8j:B, 5e9j:A, 5e9j:B, 5e9w:A, 5e9w:B, 5e9w:C, 5e9w:D, 3epp:A, 3epp:B, 8q69:A, 8q69:B, 8q8g:A, 8q8g:B, 8q9w:A, 8q9w:B
2 1ri1:A 252 269 0.3690 0.3968 0.3717 2.67e-44 2hv9:A, 1ri2:A, 1ri3:A, 1ri4:A, 1z3c:A
3 6rie:O 822 146 0.1513 0.0499 0.2808 4.35e-07 4ckb:A, 4ckb:D, 4ckc:A, 4ckc:D, 4cke:A, 4cke:D, 2vdw:A, 2vdw:C, 2vdw:E, 2vdw:G
4 7d8u:A 284 271 0.2362 0.2254 0.2362 2.16e-04 7d8u:B
5 7ofl:A 335 69 0.0627 0.0507 0.2464 0.14 7ofl:B
6 1ve3:B 226 132 0.1439 0.1726 0.2955 0.62 1ve3:A
7 3mb5:A 255 31 0.0406 0.0431 0.3548 0.90 3lga:A, 3lga:B, 3lga:C, 3lga:D, 3lhd:C, 3lhd:A, 3lhd:B, 3lhd:D
8 7wzg:B 243 126 0.1144 0.1276 0.2460 2.1 7wzg:A, 7wzg:C, 7wzg:D, 7wzg:E, 7wzg:F
9 3b6u:B 343 72 0.0627 0.0496 0.2361 2.6 3b6u:A
10 5dpl:A 520 143 0.1439 0.0750 0.2727 3.0 5doo:A, 5dpl:B
11 6cx6:B 333 33 0.0554 0.0450 0.4545 3.2 6cx6:A, 5eg5:A, 4fr0:A, 4fsd:A, 4kw7:A, 4rsr:A
12 5dm0:B 272 51 0.0627 0.0625 0.3333 3.5 5dly:A, 5dm0:A, 4kvz:A
13 3vc1:D 288 66 0.0664 0.0625 0.2727 5.3 4f86:D, 4f86:G, 3vc1:A, 3vc1:B, 3vc1:C, 3vc1:E, 3vc1:F, 3vc1:G, 3vc1:H, 3vc1:I, 3vc1:J, 3vc1:K, 3vc1:L, 3vc2:A, 3vc2:B, 3vc2:C, 3vc2:D, 3vc2:E, 3vc2:F, 3vc2:G, 3vc2:H, 3vc2:I, 3vc2:J, 3vc2:K, 3vc2:L
14 7r7e:A 567 82 0.0812 0.0388 0.2683 6.2 7r7e:B, 7r7f:A, 7r7f:B, 7r7g:A, 7r7g:B
15 6p3o:A 341 22 0.0443 0.0352 0.5455 6.5 6p3m:A, 6p3n:A
16 4rh7:A 3005 46 0.0664 0.0060 0.3913 6.7
17 2j3e:A 249 61 0.0738 0.0803 0.3279 6.7 3bb3:A, 3bb4:A, 3def:A
18 7qd4:A 908 74 0.0738 0.0220 0.2703 6.9 7qd4:D, 7qd5:A, 7qd5:D, 7qd6:A, 7qd6:D
19 6sc2:B 3930 46 0.0664 0.0046 0.3913 7.4 6rla:A, 6rla:B, 6sc2:A
20 6gkv:A 351 113 0.1033 0.0798 0.2478 8.4 6gkv:B, 6gky:A, 6gky:B, 6gkz:A, 6gkz:B, 6gkz:C, 6gkz:D
21 2zyo:A 385 63 0.0701 0.0494 0.3016 9.9 2zyk:A, 2zyk:B, 2zyk:C, 2zyk:D, 2zym:A, 2zyn:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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