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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
FYINSKYKIDLDKIMTKMKNKSVINIDDVDDEELLAILYTSKQFEKILKNNEDSKYLENKVFCSVFLEPSTRTRCSFDAA
ILKLGSKVLNITDMNSTSFYKGETVEDAFKILSTYVDGIIYRDPSKKNVDIAVSSSSKPIINAGNGTGEHPTQSLLDFYT
IHNYFPFILDRNINKKLNIAFVGDLKNGRTVHSLSKLLSRYNVSFNFVSCKSLNIPKDIVNTITYNLKKNNFYSDDSIKY
FDNLEEGLEDVHIIYMTRIQKERFTDVDEYNQYKNAFILSNKTLENTRDDTKILHPLPRVNEIKVEVDSNPKSVYFTQAE
NGLYVRMALLYLIFSSTSSAWSHPQF

The query sequence (length=346) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7zea:B 346 346 1.0000 1.0000 1.0000 0.0 6fba:A, 6fba:B, 6fba:C, 6hl7:A, 7zcz:A, 7zcz:C, 7zcz:B, 7zea:A, 7zgs:A, 7zgs:C, 7zgs:B, 7zhi:A, 7zhi:C, 7zhi:B, 7zid:B, 7zp2:A, 7zp2:B, 7zst:B, 7zst:C
2 6hl7:C 322 346 0.9220 0.9907 0.9220 0.0
3 5g1n:E 307 316 0.3410 0.3844 0.3734 1.59e-79 5g1n:A, 5g1n:B, 5g1n:C, 5g1n:D, 5g1n:F, 5g1p:A, 5g1p:B, 5g1p:C, 5g1p:D, 5g1p:E, 5g1p:F
4 1ml4:A 307 317 0.3526 0.3974 0.3849 1.55e-77
5 4ekn:B 304 315 0.3902 0.4441 0.4286 2.56e-75
6 2a0f:A 310 318 0.3584 0.4000 0.3899 3.60e-71 1acm:A, 1acm:C, 2air:A, 2air:G, 1at1:A, 1at1:C, 2at1:A, 2at1:C, 3at1:A, 3at1:C, 7at1:A, 7at1:C, 8at1:A, 8at1:C, 8atc:A, 8atc:C, 1d09:A, 1d09:C, 1ekx:A, 1ekx:B, 1ekx:C, 4f04:A, 4f04:C, 1f1b:A, 1f1b:C, 4fyv:A, 2fzc:A, 2fzc:C, 2fzg:A, 2fzg:C, 2fzk:A, 2fzk:C, 2h3e:A, 2h3e:C, 2hse:A, 2hse:C, 2ipo:A, 2ipo:C, 4kgv:A, 4kgv:C, 4kgx:A, 4kgx:C, 4kgz:A, 4kgz:C, 4kh0:A, 4kh0:C, 4kh1:A, 4kh1:C, 3mpu:A, 3mpu:C, 3mpu:E, 3npm:A, 1q95:A, 1q95:B, 1q95:C, 1q95:D, 1q95:F, 1q95:E, 1r0b:A, 1r0b:B, 1r0b:C, 1r0b:D, 1r0b:E, 1r0b:F, 1r0c:A, 1r0c:G, 1tth:A, 1tth:C, 1tu0:A, 1tu0:C, 1tug:A, 1tug:C, 5vmq:C, 1xjw:A, 1xjw:C, 1za2:A, 1za2:C
7 8bpl:A 316 283 0.3208 0.3513 0.3922 5.28e-65
8 6yvb:C 324 317 0.3526 0.3765 0.3849 3.48e-64 6ypo:A, 6ypo:B, 6ys6:B, 6ys6:C, 6ysp:A, 6ysp:B, 6ysp:C, 6yvb:A, 6yvb:B, 6yvb:D, 6yvb:E, 6yvb:F, 6yw9:A, 6yw9:B, 6yw9:C, 6ywj:A, 6ywj:B
9 6jks:D 328 330 0.2977 0.3140 0.3121 4.48e-59 6jkr:A, 6jkr:D, 6jkr:F, 6jks:A, 6jks:F, 6jkt:A, 6jkt:B, 6jkt:C, 6jkt:D, 6jkt:E, 6jl4:A, 6jl4:B, 6jl4:C, 6jl4:D, 6jl4:E, 6jl4:F, 6jl5:A, 6jl5:B, 6jl5:C, 6jl5:D, 6jl5:E, 6jl5:F, 6jl6:C
10 6jkr:E 308 324 0.2919 0.3279 0.3117 2.55e-56 6jkr:B, 6jkr:C, 6jks:B, 6jks:C, 6jks:E, 6jkt:F
11 3r7d:A 291 313 0.2919 0.3471 0.3227 4.66e-40 3r7d:C, 3r7d:B, 3r7f:A, 3r7f:B, 3r7f:C, 3r7l:A, 3r7l:B, 3r7l:C, 3r7l:D, 3r7l:E, 3r7l:F
12 6pnz:A 293 319 0.2803 0.3311 0.3041 2.38e-33 6pnz:B, 6pnz:C
13 4nf2:A 307 330 0.2746 0.3094 0.2879 4.29e-29 4nf2:B, 4nf2:C
14 4bjh:B 291 323 0.2659 0.3162 0.2848 1.39e-24 3d6n:B
15 1c9y:A 321 332 0.2312 0.2492 0.2410 1.91e-18 1ep9:A, 1fb5:A, 1fvo:A, 1fvo:B, 1oth:A
16 7nnv:A 308 272 0.2081 0.2338 0.2647 2.61e-17 2i6u:A, 2i6u:B, 2i6u:C, 7nnv:B, 7nnv:C, 7nnv:D, 7nnv:E, 7nnv:F, 7nnw:A, 7nnw:B, 7nnw:C, 7nnw:D, 7nnw:E, 7nnw:F, 7nny:C, 7nny:A, 7nny:B, 7nny:D, 7nny:F, 7nny:E, 7nnz:C, 7nnz:B, 7nnz:D, 7nnz:F, 7nnz:E, 7nor:A, 7nor:C, 7nor:B, 7nor:D, 7nor:F, 7nor:E, 7nos:A, 7nos:C, 7nos:D, 7nos:F, 7nos:E, 7nou:A, 7nou:B, 7nou:C, 7nou:D, 7nou:F, 7nou:E, 7nov:A, 7nov:C, 7nov:B, 7nov:D, 7nov:E, 7nov:F, 7np0:B, 7np0:C, 7np0:A, 7np0:D, 7np0:F, 7np0:E
17 1duv:G 333 346 0.2341 0.2432 0.2341 1.49e-15 1duv:H, 1duv:I, 2otc:A, 2otc:B, 2otc:C, 2otc:D, 2otc:E, 2otc:F, 2otc:G, 2otc:H, 2otc:I
18 4am8:D 349 310 0.2168 0.2149 0.2419 2.08e-13 4a8h:A, 4a8h:B, 4a8p:A, 4a8p:B, 4a8p:C, 4a8p:D, 4a8p:E, 4a8p:F, 4a8t:A, 4am8:A, 4am8:B, 4am8:C, 4am8:E, 4am8:F
19 8qeu:A 304 318 0.2254 0.2566 0.2453 1.18e-12 8qeu:B, 8qeu:C, 8qev:A, 8qev:B, 8qev:C
20 4jfr:B 340 344 0.2254 0.2294 0.2267 1.73e-12 4h31:A, 4h31:B, 4h31:C, 4jfr:A, 4jhx:A, 4jhx:C, 4jqo:A, 4jqo:B, 4jqo:C
21 3kzk:A 334 339 0.2283 0.2365 0.2330 5.00e-07 3kzm:A, 3kzn:A, 3kzo:A, 3l02:A, 3l04:A, 3l05:A, 3l06:A, 3m4j:A, 3m4n:A, 3m5c:A, 3m5d:A
22 1js1:X 324 135 0.1069 0.1142 0.2741 7.87e-04 2fg6:X, 2fg6:Z, 2fg6:Y, 2fg6:C, 2fg6:D, 2fg6:E, 2fg7:X, 2fg7:Z, 2fg7:Y, 2fg7:C, 2fg7:D, 2fg7:E, 2g7m:X, 2g7m:Z, 2g7m:Y, 2g7m:C, 2g7m:E, 2g7m:D, 1js1:Y
23 6iy8:A 469 87 0.0549 0.0405 0.2184 0.13 6iy8:B, 6iy8:C, 6iy8:D
24 1ons:A 278 51 0.0462 0.0576 0.3137 1.7
25 8j44:A 293 55 0.0607 0.0717 0.3818 1.9 8j44:B, 8whg:B, 8whg:E, 8whg:F
26 2heo:A 59 35 0.0376 0.2203 0.3714 3.1 2heo:D, 1j75:A
27 4aao:A 303 41 0.0405 0.0462 0.3415 5.0
28 3wst:I 644 120 0.0954 0.0512 0.2750 7.3 3wst:A, 3wst:D, 3wst:B, 3wst:C, 3wst:F, 3wst:E, 3wst:G, 3wst:H, 3wst:M, 3wst:N, 3wst:O, 3wst:P, 3wst:Q, 3wst:R, 3wst:J, 3wst:K, 3wst:L, 3x0d:A
29 7v6c:A 1540 34 0.0405 0.0091 0.4118 8.0
30 7w0b:A 1586 34 0.0405 0.0088 0.4118 8.3 7w0d:F
31 8hf0:A 1561 34 0.0405 0.0090 0.4118 8.6 8hf0:D, 8hf1:A, 8hf1:D, 8hf1:G, 7w0a:A, 7w0a:E, 7w0c:A, 7w0d:A, 7w0e:A, 7w0f:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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