Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
FYGGYNVIALDREYRHALVCGPDRDYLWILSRTPTISDEVKQEMLAVATREGFDVSKFIWVQQPGS

The query sequence (length=66) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2aco:A 168 66 1.0000 0.3929 1.0000 3.00e-45 2aco:B, 6ubo:A, 6ubo:B, 6ukl:E, 6ukl:D, 6ukl:F, 6vri:D, 6vri:E, 6vri:F
2 8wb2:A 179 56 0.3788 0.1397 0.4464 1.34e-12
3 6zwm:B 2185 65 0.2727 0.0082 0.2769 0.012 6zwm:A
4 8rch:A 2036 59 0.2576 0.0083 0.2881 0.012 8rch:B, 8rck:B, 8rcn:B
5 6bcu:A 2204 65 0.2727 0.0082 0.2769 0.012 6bcu:B, 6bcx:A, 6bcx:B, 4drh:B, 4drh:E, 4dri:B, 4drj:B, 8er6:B, 8er6:D, 8er6:F, 8er7:B, 8er7:D, 8er7:F, 8era:A, 9f44:A, 9f44:B, 9f45:A, 9f45:B, 1fap:B, 2fap:B, 3fap:B, 4fap:B, 5flc:B, 5flc:F, 5gpg:B, 4jsp:B, 4jsp:A, 4jsv:B, 4jsv:A, 4jsx:B, 4jsx:A, 4jt5:B, 4jt5:A, 4jt6:B, 4jt6:A, 6m4u:B, 6m4u:F, 6m4w:G, 6m4w:H, 6m4w:I, 1nsg:B, 7pe7:B, 7pe7:A, 7pe8:A, 7pe9:A, 7pea:B, 7pea:A, 7peb:A, 7pec:A, 8ppz:B, 7uxc:A, 7uxh:A, 7uxh:C, 5wbh:C, 5wbh:D, 5wbu:B, 5wbu:A, 6zwo:B
6 3jbz:A 960 65 0.2727 0.0187 0.2769 0.014
7 1gka:B 174 68 0.3182 0.1207 0.3088 0.028
8 2ktd:A 167 46 0.1970 0.0778 0.2826 0.12
9 4i2w:A 904 46 0.2273 0.0166 0.3261 0.46 4i2z:A
10 5eiy:B 658 27 0.1364 0.0137 0.3333 0.97 5ej1:B, 5ejz:B, 4hg6:B, 4p00:B, 4p02:B
11 8j80:B 288 19 0.1515 0.0347 0.5263 3.7 8j7u:A, 8j7u:B, 8j7w:A, 8j7w:B, 8j7y:A, 8j7y:B
12 1bbp:A 173 53 0.2424 0.0925 0.3019 3.7 1bbp:B, 1bbp:C, 1bbp:D
13 6ciz:C 477 22 0.1667 0.0231 0.5000 4.2 6chi:A, 6chi:B, 6chi:C, 6chi:D, 6cir:A, 6cir:B, 6cir:C, 6cir:D, 6ciz:A, 6ciz:B, 6ciz:D, 8fda:A, 8fda:B, 8fda:C, 8fda:D, 5irq:A, 5irq:B, 5irq:C, 5irq:D, 5irv:A, 5irv:B, 5irv:C, 5irv:D, 4nkv:A, 4nkv:B, 4nkv:C, 4nkv:D, 4nkw:A, 4nkw:B, 4nkw:C, 4nkw:D, 4nkx:A, 4nkx:B, 4nkx:C, 4nkx:D, 4nky:A, 4nky:B, 4nky:C, 4nky:D, 4nkz:A, 4nkz:B, 4nkz:C, 4nkz:D, 3ruk:A, 3ruk:B, 3ruk:C, 3ruk:D, 3swz:A, 3swz:B, 3swz:C, 3swz:D, 5uys:A, 5uys:B, 5uys:C, 5uys:D, 6wr0:A, 6wr0:B, 6wr0:C, 6wr0:D, 6wr1:A, 6wr1:B, 6ww0:A, 6ww0:B, 6ww0:C, 6ww0:D
14 8c0j:A 200 30 0.1515 0.0500 0.3333 5.3 8c0j:C
15 6y48:B 538 32 0.1515 0.0186 0.3125 5.3 6y48:A, 6y48:C, 6y48:D
16 1vz0:B 192 18 0.1364 0.0469 0.5000 6.0 1vz0:A, 1vz0:C, 1vz0:D
17 4d5y:Z 136 14 0.1515 0.0735 0.7143 6.0 7a01:22, 8a3d:T, 5aj0:AZ, 8b5l:Z, 8b6c:Z, 9bdl:AL27, 9bdn:AL27, 9bdp:AL27, 7bhp:LZ, 8bhf:M1, 8bpo:Y2, 8btk:BZ, 7cpu:LZ, 7cpv:LZ, 4d67:Z, 6d90:Z, 6d9j:Z, 9f1b:BZ, 9f1c:BZ, 9f1d:BZ, 7f5s:LZ, 8fky:LJ, 8fkz:LJ, 8fl2:LJ, 8fl3:LJ, 8fl4:LJ, 8fl6:LJ, 8fl7:LJ, 8fl9:LJ, 8fla:LJ, 8flb:LJ, 8flc:LJ, 8fld:LJ, 8fle:LJ, 8flf:LJ, 6frk:Z, 6ftg:Z, 6fti:Z, 6ftj:Z, 8g5y:LZ, 8g5z:LZ, 8g60:LZ, 8g61:LZ, 8g6j:LZ, 8glp:LZ, 6gz3:AZ, 6gz4:AZ, 6gz5:AZ, 6hcf:Z3, 6hcj:Z3, 6hcm:Z3, 6hcq:Z3, 8idt:i, 8idy:i, 8ie3:i, 8ifd:2T, 8ife:2T, 8ine:i, 8inf:i, 8ink:i, 6ip5:2T, 6ip6:2T, 6ip8:2T, 8ipd:i, 8ipx:i, 8ipy:i, 8ir1:i, 8ir3:i, 3j7o:Z, 3j7p:Z, 3j7q:Z, 3j7r:Z, 3j92:Z, 3jag:Z, 3jah:Z, 3jai:Z, 3jaj:Z, 3jan:Z, 8jdj:e, 8jdk:e, 8jdl:e, 8jdm:e, 8k2c:LZ, 5lks:LZ, 6lqm:i, 6lsr:i, 6lss:i, 7ls1:T2, 7ls2:T2, 6lu8:i, 5lzs:Z, 5lzt:Z, 5lzu:Z, 5lzv:Z, 5lzw:Z, 5lzx:Z, 5lzy:Z, 5lzz:Z, 7mdz:Z, 6mtb:Z, 6mtc:Z, 6mtd:Z, 6mte:Z, 7nfx:Z, 7nwg:Z3, 7nwh:Z, 7nwi:Z, 7o7y:BZ, 7o7z:BZ, 7o80:BZ, 7o81:BZ, 7obr:Z, 8ohd:LZ, 8oj0:LZ, 8oj5:LZ, 8oj8:LZ, 6ole:a, 6olf:a, 6olg:AZ, 6oli:a, 6olz:AZ, 6om0:a, 6om7:a, 7ow7:T, 7oya:Z1, 7oyb:Z1, 7oyc:Z1, 7oyd:Z, 8p2k:BZ, 6p5i:AZ, 6p5j:AZ, 6p5k:AZ, 6p5n:AZ, 8q7z:BZ, 8q87:BZ, 8qfd:Z, 7qgg:a, 8qoi:LZ, 7qvp:LZ, 7qvp:MZ, 7qwq:Z, 7qwr:Z, 7qws:Z, 6qzp:LZ, 6r5q:Z, 6r6g:Z, 6r6p:Z, 6r7q:Z, 8rjb:Z, 8rjc:Z, 8rjd:Z, 8scb:Z, 6sgc:Z2, 6swa:X, 5t2c:T, 6t59:Z3, 7tm3:Z, 7toq:AL27, 7tor:AL27, 7tut:Z, 7ucj:Z, 7uck:Z, 4ug0:LZ, 4ujc:BZ, 4ujd:AZ, 4uje:CZ, 4v6x:CZ, 6w6l:a, 6xa1:LZ, 7xnx:LZ, 7xny:LZ, 8xsx:LZ, 8xsy:LZ, 8xsz:LZ, 6y0g:LZ, 8y0w:LZ, 8y0x:LZ, 6y2l:LZ, 6y57:LZ, 6y6x:LZ, 8yoo:LZ, 8yop:LZ, 6z6l:LZ, 6z6m:LZ, 6z6n:LZ, 7zjw:Lc, 7zjx:Lc, 6zm7:LZ, 6zme:LZ, 6zmi:LZ, 6zmo:LZ, 6zvk:22
18 4imo:A 155 67 0.2727 0.1161 0.2687 7.7
19 8an2:AAA 1040 24 0.1515 0.0096 0.4167 8.7 8an3:AAA, 7zcx:AAA
20 6v4x:J 311 31 0.1364 0.0289 0.2903 9.0
21 4q0p:A 249 30 0.1515 0.0402 0.3333 9.2 4q0q:A, 4q0s:A, 4q0u:A, 4q0v:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218