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BioLiP
>protein
FVQTCREEHKKKHPDASVNFSEFSKKCSERRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTDKQPYEKKAA
KLKEKYEKDI

The query sequence (length=90) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6cik:N 90 90 1.0000 1.0000 1.0000 1.73e-63 6cg0:N, 6cim:N
2 6cij:N 133 123 0.9778 0.6617 0.7154 2.66e-45 5zdz:N, 5ze1:N, 5ze2:N
3 5ze0:N 118 114 0.9222 0.7034 0.7281 3.30e-40 1ckt:A
4 2gzk:A 159 96 0.7444 0.4214 0.6979 3.61e-32 9bvd:C, 9bvd:F, 9bvd:I, 6cil:N, 6edb:B, 1hry:A, 1hrz:A, 1j46:A, 1j47:A, 6oem:N, 6oem:H, 6oen:N, 6oen:H, 6oeo:N, 6oer:H
5 2gzk:A 159 64 0.2222 0.1258 0.3125 0.005 9bvd:C, 9bvd:F, 9bvd:I, 6cil:N, 6edb:B, 1hry:A, 1hrz:A, 1j46:A, 1j47:A, 6oem:N, 6oem:H, 6oen:N, 6oen:H, 6oeo:N, 6oer:H
6 4qr9:A 75 30 0.3333 0.4000 1.0000 1.20e-15 4qr9:B
7 1e7j:A 74 62 0.2889 0.3514 0.4194 1.15e-11 3nm9:D, 3nm9:G, 3nm9:J, 3nm9:P, 3nm9:M, 3nm9:A, 1qrv:A, 1qrv:B, 8r1x:A
8 1j5n:A 93 63 0.2889 0.2796 0.4127 1.08e-09
9 4s2q:D 76 63 0.2111 0.2500 0.3016 5.91e-07 4euw:A
10 5jh0:D 157 57 0.2222 0.1274 0.3509 9.91e-06 5jgh:A, 5jgh:D, 5jgh:G, 5jgh:J, 5jh0:A
11 5jh0:D 157 51 0.1667 0.0955 0.2941 3.25e-04 5jgh:A, 5jgh:D, 5jgh:G, 5jgh:J, 5jh0:A
12 4y60:C 76 63 0.2000 0.2368 0.2857 1.26e-05
13 7m5w:A 138 62 0.2444 0.1594 0.3548 1.18e-04 6jrp:A, 6jrp:D, 6jrp:G, 6jrp:J
14 6l6y:D 80 63 0.1889 0.2125 0.2698 1.18e-04 4a3n:A, 3f27:D, 6l6y:F
15 6t78:A 77 63 0.2000 0.2338 0.2857 2.85e-04 6t78:B, 3u2b:C
16 1gt0:D 79 63 0.2000 0.2278 0.2857 3.86e-04 8bx1:E, 8bx2:E, 6ht5:D, 1o4x:B, 6t90:L, 6yov:L
17 6zm7:CE 124 39 0.1333 0.0968 0.3077 0.46 8k2c:CE, 8xsy:CE, 6z6l:CE, 6zme:CE
18 6ci6:A 581 95 0.2667 0.0413 0.2526 1.1 5dby:A, 5dqf:A, 5id9:A, 5iih:A, 5iiu:A, 5iix:A, 5ij5:A, 5ije:A, 4j2v:A, 7mbl:A, 6mdq:A, 6oci:A, 6ocj:A, 4ot2:A, 7q4x:A, 6u4r:A, 6u4x:A, 6u5a:A, 5v0v:A, 6xk0:A, 4zbq:A, 4zbr:A
19 6hb4:A 197 38 0.0889 0.0406 0.2105 1.6 6erp:C, 6erp:G, 6erq:C, 6erq:G, 6hb4:D, 6hb4:G, 6hb4:J, 6hc3:A, 6hc3:D, 6hc3:G, 6hc3:J, 7lbw:A, 7lbw:B, 7lbx:A, 7lbx:B, 4nnu:A, 4nnu:B, 4nod:A, 4nod:B, 4nod:G, 4nod:H, 3tmm:A, 3tq6:A, 3tq6:B
20 8tux:ab 127 29 0.1111 0.0787 0.3448 2.2 2qux:A, 2qux:B, 2qux:E, 2qux:D, 2qux:G, 2qux:H, 2qux:J, 2qux:K, 2qux:M, 2qux:N, 2qux:P, 2qux:Q
21 7evv:A 489 40 0.1667 0.0307 0.3750 2.7 6a88:A, 6a88:B, 6a88:C, 6a88:D, 7evu:A, 7evu:B, 7f9p:A, 7f9q:A, 7f9q:B, 7f9r:A, 7f9s:A, 7f9t:A, 7f9t:B, 7f9u:A, 7f9u:B, 7f9u:C, 7f9u:D, 7f9v:A, 7f9v:B, 7fak:A, 7fal:A, 7fal:B, 7fam:A, 7fan:A, 7v8j:A, 7v8j:B, 7v8k:A, 7v8k:B, 7vc1:A, 7vc2:A, 7vc2:B, 7vc3:A, 7vc5:A, 5xig:A, 5xig:B, 5xig:C, 5xig:D, 5xih:A, 5xih:B, 5xih:C, 5xih:D, 5xii:A, 5xii:B, 5xii:C, 5xii:D, 5xij:A, 5xij:B, 5xij:C, 5xij:D, 5xik:A, 5xik:B, 5xik:C, 5xik:D, 5xiq:A, 5xiq:B, 5xiq:C, 5xiq:D
22 7zme:J 186 16 0.1111 0.0538 0.6250 6.6 7zmg:J, 7zmh:J
23 2lef:A 86 44 0.1111 0.1163 0.2273 8.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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