Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
FVPNKEQTRTVLIFCFHLKKTAAESHRMLVEAFGEQVPTVKTCERWFQRFKSGDFDVDDKEHGKPPKRYEDAELQALLDE
DDAQTQKQLAEQLEVSQQAVSNRLREMGKIQKVGRWVPHELNERQMERRKNTCEILLSRYKRKSFLHRIVTGDEKWIFFV
NPKRKKSYVDPGQPATSTARPNRFGKKTMLCVWWDQSGVIYYELLKPGETVNAARYQQQLINLNRALQRKRPEYQKRQHR
VIFLHANAPSHTARAVRDTLETLNWEVLPHAAYSPDLAPSDYHLFASMGHALAEQRFDSYESVKKWLDEWFAAKDDEFYW
RGIHKLPERWEKCVASDGKYFE

The query sequence (length=342) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4u7b:A 342 342 1.0000 1.0000 1.0000 0.0 3hos:A, 3hos:B, 3hot:A, 3hot:B, 5hoo:A, 5hoo:B, 4r79:A, 4r79:B, 4u7b:B, 4u7b:G
2 2f7t:A 204 227 0.5936 0.9951 0.8943 6.87e-149 4mda:A, 4mdb:A
3 3f2k:A 197 223 0.2427 0.4213 0.3722 5.96e-46 3f2k:B
4 7s03:A 108 104 0.0877 0.2778 0.2885 3.37e-14
5 1tiq:A 173 87 0.0673 0.1329 0.2644 1.8 1tiq:B
6 7cuh:A 305 79 0.0526 0.0590 0.2278 1.9 4hid:A, 4hik:A, 4him:A, 4hio:A, 4hj5:A, 4hj7:A, 4hj8:A, 4hj9:A, 4hja:A, 5usb:A, 5usn:A, 5uso:A
7 4etp:A 379 85 0.0789 0.0712 0.3176 4.0 1f9t:A, 1f9u:A, 1f9v:A, 3kar:A
8 7v3x:T 415 75 0.0585 0.0482 0.2667 4.8
9 2d3k:B 118 36 0.0322 0.0932 0.3056 4.8
10 4rl6:A 414 59 0.0585 0.0483 0.3390 6.0 4rl6:B
11 6c2c:A 299 56 0.0556 0.0635 0.3393 7.7 6c2c:B, 5hif:A, 5hif:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218