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BioLiP
>protein
FVNQHLCGSHLVEALYLVCGEKGFFYTDKT

The query sequence (length=30) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8z4b:B 30 30 1.0000 1.0000 1.0000 5.29e-17 8z4b:D
2 8pi5:D 53 30 0.9000 0.5094 0.9000 5.03e-15 2a3g:B, 2a3g:D, 7ac4:B, 1ai0:B, 1ai0:F, 1ai0:D, 1ai0:L, 1ai0:H, 1ai0:J, 1aiy:B, 1aiy:F, 1aiy:D, 1aiy:L, 1aiy:J, 1aiy:H, 2aiy:B, 2aiy:F, 2aiy:D, 2aiy:L, 2aiy:J, 2aiy:H, 3aiy:B, 3aiy:F, 3aiy:D, 3aiy:L, 3aiy:J, 3aiy:H, 4aiy:B, 4aiy:F, 4aiy:D, 4aiy:L, 4aiy:J, 4aiy:H, 5aiy:B, 5aiy:F, 5aiy:D, 5aiy:L, 5aiy:J, 5aiy:H, 1aph:B, 1b17:B, 1b18:B, 1b19:B, 1b2a:B, 1b2b:B, 1b2c:B, 1b2d:B, 1b2e:B, 1b2f:B, 1b2g:B, 1b9e:B, 1b9e:D, 1ben:B, 2bn1:B, 2bn3:B, 1bph:B, 5bqq:F, 5bqq:D, 5bqq:J, 5bqq:L, 5bqq:H, 4bs3:B, 5bts:B, 3bxq:B, 3bxq:D, 6ce7:O, 6ce9:L, 6ce9:O, 6ceb:L, 6ceb:O, 5cny:B, 5cny:D, 5co2:B, 5co2:D, 5co6:B, 5co6:D, 5co9:B, 5co9:D, 1cph:B, 4cy7:D, 5d52:B, 5d53:B, 5d54:B, 5d5e:B, 1dph:B, 4e7t:B, 4e7t:D, 4e7u:B, 5e7w:B, 5e7w:D, 2efa:B, 7elj:B, 5en9:B, 5ena:B, 1ev6:F, 4eww:B, 4eww:D, 4ewx:B, 4ewx:D, 4ewz:B, 4ewz:D, 3exx:B, 3exx:D, 4ex0:B, 4ex0:D, 4ex1:B, 4ex1:D, 4exx:B, 4exx:D, 4ey1:B, 4ey1:D, 4ey9:B, 4ey9:D, 4eyd:B, 4eyd:D, 4eyn:B, 4eyn:D, 4eyp:B, 4eyp:D, 4f0n:B, 4f0n:D, 4f0o:B, 4f0o:D, 4f1a:B, 4f1a:D, 4f1b:B, 4f1b:D, 4f1c:B, 4f1c:D, 4f1d:B, 4f1d:D, 4f1f:B, 4f1f:D, 4f1g:B, 4f1g:D, 4f4t:B, 4f4t:D, 4f4v:B, 4f4v:D, 4f51:B, 4f51:D, 4f8f:B, 4f8f:D, 5fb6:B, 4fg3:B, 4fg3:D, 3fhp:B, 3fhp:D, 4fka:B, 4fka:D, 3fq9:B, 3fq9:D, 1fu2:B, 1fu2:D, 1fu2:F, 1fu2:H, 1fub:B, 1fub:D, 2g4m:B, 1g7a:B, 1g7a:F, 1g7b:B, 1g7b:F, 4gbc:D, 4gbi:D, 4gbk:D, 4gbl:D, 4gbn:D, 3gky:B, 3gky:D, 6gnq:B, 6gnq:D, 8gsg:B, 8gsg:D, 1guj:B, 1guj:D, 6h3m:D, 6h3m:P, 6h3m:L, 1hiq:B, 1hit:B, 2hiu:B, 1hls:B, 5hpr:B, 5hrq:B, 5hrq:D, 5hrq:H, 8hsk:B, 3i3z:B, 3i40:B, 4i5y:B, 4i5z:B, 4idw:B, 4idw:D, 4ihn:B, 3ilg:B, 3ilg:D, 3inc:B, 3inc:D, 3ins:B, 3ins:D, 4ins:B, 4ins:D, 7ins:B, 7ins:D, 7ins:F, 9ins:B, 3ir0:B, 3ir0:D, 3ir0:F, 3ir0:H, 3ir0:J, 3ir0:L, 3ir0:N, 3ir0:P, 3ir0:S, 3ir0:U, 3ir0:W, 3ir0:Y, 1iza:B, 1iza:D, 1izb:B, 1izb:D, 1j73:B, 1j73:D, 1jca:B, 3jsd:B, 3jsd:D, 2jv1:B, 6k59:B, 7kd6:B, 7kd6:T, 6kh8:B, 6kh9:B, 6kha:B, 3kq6:B, 3kq6:D, 2kxk:B, 2lgb:B, 5lis:B, 2m2m:B, 2m2n:B, 2m2o:B, 2m2p:B, 4m4f:D, 4m4h:D, 4m4i:D, 4m4j:D, 4m4l:B, 4m4l:D, 4m4m:B, 4m4m:D, 1m5a:B, 1m5a:D, 5mam:P, 7md5:T, 7md5:P, 7md5:R, 7md5:V, 1mhi:B, 5mhd:B, 5miz:B, 1mpj:D, 1mso:B, 1mso:D, 3mth:D, 2mvc:B, 2mvd:B, 5mwq:B, 2om1:J, 2om1:R, 2om1:T, 2omi:B, 3p2x:B, 3p2x:D, 3p33:B, 3p33:D, 3p33:F, 3p33:H, 6p4z:B, 1q4v:B, 1q4v:D, 3q6e:D, 6q8q:B, 7qac:B, 1qiy:B, 1qiy:F, 1qiy:D, 1qiy:L, 1qiy:J, 1qiy:H, 1qiz:B, 1qiz:F, 1qiz:D, 1qiz:L, 1qiz:J, 1qiz:H, 2qiu:B, 2qiu:D, 7qid:F, 7qid:L, 7qid:J, 1qj0:D, 6qq7:B, 6qqg:B, 6qrh:B, 6qrk:B, 2r35:D, 2r36:B, 2r36:D, 2rn5:B, 3rto:B, 3rto:D, 1rwe:B, 1rwe:D, 4rxw:B, 4rxw:D, 6s34:B, 7s4y:B, 7s4y:D, 1sf1:B, 6sof:H, 6sof:F, 6sof:L, 6sof:J, 3t2a:B, 2tci:D, 6tc2:J, 1trz:B, 1trz:D, 3tt8:B, 3tt8:D, 1tyl:B, 4une:B, 5uqa:B, 3v19:B, 3v19:D, 3v1g:B, 3v1g:D, 7v3p:F, 3w7y:B, 3w7y:D, 3w7z:B, 3w7z:D, 3w80:B, 3w80:D, 3w80:F, 3w80:H, 1wav:B, 1wav:F, 1wav:D, 1wav:J, 1wav:H, 1wav:L, 4xc4:B, 4xc4:D, 1xgl:B, 1xw7:B, 1xw7:D, 7z5q:B, 1zeg:B, 1zeg:D, 1zeh:B, 1zeh:D, 1zei:A, 1zei:B, 1zei:C, 1zei:D, 1zei:E, 1zei:F, 1zni:B, 1zni:D, 1znj:B, 1znj:L, 1znj:J, 2zp6:B, 2zp6:D, 2zpp:B
3 1jco:B 30 30 0.9000 0.9000 0.9000 5.11e-15
4 2mpg:B 30 30 0.8667 0.8667 0.8667 1.66e-14
5 2n2v:B 30 30 0.8667 0.8667 0.8667 3.90e-14 2n2w:B
6 2l1y:B 30 30 0.8333 0.8333 0.8333 5.55e-14 4nib:B, 3rov:B, 3rov:F, 3rov:D, 3rov:L, 3rov:J, 3rov:H
7 2n2x:B 30 30 0.8333 0.8333 0.8333 3.71e-13
8 2h67:B 30 30 0.8333 0.8333 0.8333 5.11e-13 2hh4:B, 2hho:B, 4iuz:B, 2jmn:B, 2jum:B, 2juu:B, 2juv:B, 1k3m:B, 2k91:B, 2k9r:B, 2kjj:B, 2kju:B, 1kmf:B, 2kqq:B, 2l1z:B, 1lkq:B, 1lph:B, 1lph:D, 2m1d:B, 2m1e:B, 2mli:B, 2mpi:B, 1t1k:B, 1t1p:B, 1t1q:B, 1vkt:B, 6x4x:B
9 7kd6:H 47 25 0.8000 0.5106 0.9600 2.21e-12 7kd6:N
10 1pmx:A 70 27 0.4333 0.1857 0.4815 4.58e-05 1gzr:B, 1gzy:B, 1gzz:B, 1h02:B, 1imx:A
11 4xss:B 47 24 0.4000 0.2553 0.5000 2.31e-04
12 2h8b:B 31 19 0.3333 0.3226 0.5263 0.21 2k6t:B
13 1eax:A 241 32 0.3667 0.0456 0.3438 0.77 8g1v:A, 8g1w:A, 2gv6:A, 2gv7:A, 4is5:A, 4isl:A, 4isn:A, 4iso:A, 4jyt:A, 4jz1:A, 4jzi:A, 6n4t:A, 3ncl:A, 4o97:A, 4o9v:A, 3p8f:A, 3p8g:A, 4r0i:A, 6t9t:A
14 6kd5:B 238 27 0.3000 0.0378 0.3333 1.4
15 2f5x:B 300 11 0.3000 0.0300 0.8182 2.2 2f5x:A, 2f5x:C
16 4q7z:A 233 28 0.3333 0.0429 0.3571 4.8 4q80:A, 4q80:B
17 1wa3:D 203 23 0.3000 0.0443 0.3913 5.4 1wa3:A, 1wa3:B, 1wa3:C, 1wa3:E, 1wa3:F
18 7xpk:A 159 20 0.2333 0.0440 0.3500 8.5 7xpk:C
19 7shl:A 645 21 0.3333 0.0155 0.4762 8.6
20 8jgg:R 223 21 0.3000 0.0404 0.4286 8.8
21 2ak4:D 204 27 0.3000 0.0441 0.3333 8.9 2ak4:I, 2ak4:N, 2ak4:T, 6bj2:D, 4jrx:D, 3kxf:D, 3kxf:G, 3kxf:N, 3kxf:M, 7t2d:D, 7t2d:I, 7t2d:N, 7t2d:S
22 7pnt:M 126 19 0.2667 0.0635 0.4211 9.5 7a5f:M6, 7a5g:M6, 7a5i:M6, 7a5k:M6, 5aj3:P, 5aj4:AP, 8any:AM, 8csp:M, 8csq:M, 8csr:M, 8css:M, 8cst:M, 8csu:M, 6gaw:AP, 6gaz:AP, 3j9m:AM, 3jd5:P, 8k2a:SP, 7l08:AM, 6neq:P, 6nf8:P, 7nqh:AP, 7nql:AP, 7nsi:AP, 7nsj:AP, 6nu2:AM, 6nu3:AM, 7og4:AM, 8oin:AM, 8oip:AM, 8oir:AM, 8ois:AM, 7p2e:M, 7pnu:M, 7pnv:M, 7pnw:M, 7pnx:M, 7pny:M, 7pnz:M, 7po0:M, 7po1:M, 7po2:M, 7po3:M, 7qi4:AM, 7qi5:AM, 7qi6:AM, 8qrk:M, 8qrl:M, 8qrm:M, 8qrn:M, 6rw4:M, 6rw5:M, 6vlz:AM, 6vmi:AM, 8xt0:SP, 8xt2:SP, 6ydp:AP, 6ydw:AP, 6zm5:AM, 6zm6:AM, 6zs9:AM, 6zsa:AM, 6zsb:AM, 6zsc:AM, 6zsd:AM, 6zse:AM, 6zsg:AM

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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