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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
FTMRLKELGEFGLIDLIKKTLESKVIGDDTAPVEYCSKKLLLTTDVLNEGVHFLRSYIPEAVGWKAISVNVSDVIANGGL
PKWALISLNLPEDLEVSYVERFYIGVKRACEFYKCEVVGGNISKSEKIGISVFLVGETERFVGRDGARLGDSVFVSGTLG
DSRAGLELLLMEKEEYEPFELALIQRHLRPTARIDYVKHIQKYANASMDISDGLVADANHLAQRSGVKIEILSEKLPLSN
ELKMYCEKYGKNPIEYALFGGEDYQLLFTHPKERWNPFLDMTEIGRVEEGEGVFVDGKKVEPKGWKHF

The query sequence (length=308) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3c9u:B 312 308 1.0000 0.9872 1.0000 0.0 3c9r:A, 3c9r:B, 3c9s:A, 3c9s:B, 3c9t:A, 3c9t:B, 3c9u:A
2 5cm7:A 305 295 0.3052 0.3082 0.3186 2.00e-38 5cc8:A, 5cc8:B, 5cm7:B, 5dd7:A, 5dd7:B, 6mfm:A, 6mfm:B
3 7du3:B 327 295 0.3117 0.2936 0.3254 1.25e-35 7du3:A, 8yku:A
4 3vyt:C 336 263 0.2305 0.2113 0.2700 2.26e-09 3vys:C, 3wjp:A, 3wjq:A, 3wjr:A
5 3vti:C 305 197 0.1461 0.1475 0.2284 6.03e-05 3vti:D
6 2z1u:A 335 232 0.1721 0.1582 0.2284 1.99e-04
7 2yye:B 343 223 0.1883 0.1691 0.2601 5.27e-04 2yye:A, 2zau:A, 2zau:C
8 3u0o:B 335 182 0.1494 0.1373 0.2527 0.11 3u0o:A
9 5nof:A 325 58 0.0649 0.0615 0.3448 3.0 5nof:B
10 4ayb:N 65 29 0.0325 0.1538 0.3448 3.6 3hkz:N, 3hkz:W, 2pmz:N, 2pmz:Y, 4v8s:AO, 4v8s:BN, 2waq:N, 2wb1:N, 2wb1:O, 2y0s:N, 2y0s:O
11 5vk4:B 330 126 0.1039 0.0970 0.2540 3.9 5vk4:A
12 5z6b:A 393 93 0.0942 0.0738 0.3118 8.1
13 1esm:A 311 104 0.0747 0.0740 0.2212 8.2 1esm:B, 1esm:C, 1esm:D, 1esn:A, 1esn:B, 1esn:C, 1esn:D, 4f7w:A, 4f7w:C, 4f7w:B, 4f7w:D, 4f7w:E, 4f7w:F, 4f7w:G, 4f7w:H, 4gi7:A, 4gi7:C, 4gi7:B, 4gi7:D, 4gi7:E, 4gi7:F, 4gi7:G, 4gi7:H, 4ne2:A, 4ne2:B, 1sq5:A, 1sq5:B, 1sq5:C, 1sq5:D
14 4qsh:C 1081 39 0.0487 0.0139 0.3846 8.6 4qsh:A, 4qsh:D, 4qsh:B, 4qsk:A, 4qsk:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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