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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
FTMKYVGSIDQGTTSTRFIIFDERQRPVSVHQVPHTQHTPHPGWLEHDPMEIFRSACKCMSVAIAKLRQKDASFRKIEAI
GITNQRETTVAWDRVTKEPLCYAPVWNDLRTYDITKKVTAELGGGDSMFASKITGLPVSTYFAAFKMRWMLENVPAVADA
CRRGTLCFGTIDTWLMYKLSGGKAFVTDVTNASRTFLMDLRTRKWSPELCEKLKIPMETLPEIRSNSELFGYVETDECGV
AAALNERTPIMGSIGDQQSALFGNMCFEKGEAKNTYGTGCFLLMNVGEEARFSKHGLLSTVGFQVGRDGPCYYALEGAIA
CAGATVEWMRRNMNLFSHITECEKLARSVPGTQGIVFVPAFSGLLAPYWDPSARGTIVGMTLKTTRAHVIRAALQAIALQ
LNDVVGSMKRDAGLNLSSLRVDGGLSKNGLLMEIQASLLGVDILVPSMHETTALGAALCAGLAAGVWTSLEEVKAVSRRE
NSWKTVSPSGSAMEREAMIAEWREALKRTKWAK

The query sequence (length=513) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5azi:A 513 513 1.0000 1.0000 1.0000 0.0 5azi:B, 5azi:C, 5azi:D, 5azj:A, 5azj:B, 5azj:C, 5azj:D, 5gn5:A, 5gn5:B, 5gn5:C, 5gn5:D, 5gn6:A, 5gn6:B, 5gn6:C, 5gn6:D, 6j9q:A, 6j9q:B, 6j9q:C, 6j9q:D, 6j9v:A, 6j9v:B, 6jaf:A, 3wxj:A, 3wxj:B, 3wxj:C, 3wxj:D, 3wxk:A, 3wxk:B, 3wxk:C, 3wxk:D, 3wxl:A, 3wxl:B, 3wxl:C, 3wxl:D
2 6ude:B 495 507 0.4347 0.4505 0.4398 6.18e-148 6ude:A, 6ude:C, 6ude:D
3 1bu6:Y 499 507 0.4386 0.4509 0.4438 8.21e-148 1bo5:O, 1bo5:Z, 1bot:O, 1bot:Z, 1bu6:O, 1bu6:Z, 1bu6:X, 1bwf:Y, 1bwf:O, 3ezw:A, 3ezw:B, 3ezw:E, 3ezw:G, 3ezw:C, 3ezw:D, 3ezw:F, 3ezw:H, 1gla:G, 1glb:G, 1glc:G, 1gld:G, 1gle:G, 1glf:O, 1glf:X, 1glf:Y, 1glf:Z, 1glj:Y, 1glj:O, 1gll:Y, 1gll:O
4 3h3n:X 501 507 0.4172 0.4271 0.4221 1.42e-144 3d7e:O, 3d7e:X, 3flc:O, 3flc:X, 3h3n:O, 3h3o:O, 3h3o:X, 3h3o:B, 3h3o:C, 3h45:X, 3h45:O, 3h45:C, 3h45:D, 3h46:X, 3h46:O, 1xup:O, 1xup:X
5 3ge1:A 499 508 0.4133 0.4248 0.4173 2.86e-141 3ge1:B, 3ge1:C, 3ge1:D
6 2w41:B 507 510 0.4113 0.4162 0.4137 1.14e-133 2w40:A, 2w40:B, 2w40:C, 2w40:D, 2w41:A
7 6k76:A 485 509 0.4133 0.4371 0.4165 1.77e-131 6k76:B
8 6zq4:F 512 522 0.4542 0.4551 0.4464 7.80e-131 6zq4:A, 6zq4:B, 6zq4:C, 6zq4:D, 6zq4:E, 6zq4:G, 6zq4:H, 6zq6:A, 6zq6:B, 6zq6:C, 6zq6:D, 6zq7:A
9 3ll3:A 492 487 0.2144 0.2236 0.2259 2.60e-25 3ll3:B
10 5ya1:A 478 496 0.2320 0.2490 0.2399 1.14e-19 5ya1:B, 5ya2:A, 5ya2:B
11 2itm:A 476 478 0.2086 0.2248 0.2238 1.96e-13 2itm:B
12 3l0q:A 541 182 0.1131 0.1072 0.3187 2.07e-13
13 3kzb:A 498 475 0.2105 0.2169 0.2274 2.98e-13 3hz6:A
14 3i8b:A 506 449 0.2027 0.2055 0.2316 3.22e-09
15 3qdk:A 546 135 0.0877 0.0824 0.3333 1.27e-08
16 4bc2:A 528 496 0.1871 0.1818 0.1935 0.084 4bc2:B, 4bc2:C, 4bc4:A, 4bc4:B, 4bc4:C, 4bc5:A, 4bc5:B, 4bc5:C
17 3b57:A 180 72 0.0351 0.1000 0.2500 0.73
18 7lj2:A 507 48 0.0351 0.0355 0.3750 3.7 7lha:A, 7lha:B, 7lj2:B
19 1lk7:A 229 28 0.0195 0.0437 0.3571 4.3 1lk7:B, 1lk7:C, 1lk7:D
20 3aii:A 455 51 0.0312 0.0352 0.3137 7.0
21 7uyk:A 140 53 0.0331 0.1214 0.3208 8.3 7uyk:B
22 5ns8:A 440 18 0.0214 0.0250 0.6111 9.5 5ns8:B, 5ns8:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218