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BioLiP
>protein
FTIDSARNIFPNTLSADAVPATIARFSQLSAEDQLALVWFAYLEMGKTITIAAPGAASMVFAEKTMNEVRQMTPLEQTQV
MCDLTNRADTPISRIYSTWSANIKLGFWYQLGQWMEDGSVAPIPKGYQLSANASAVLEAIKKLEDGQQITVLRNCVVDMG
FDTSKMGTYTKVAEPVVPPKEMSERTKVSIDGVTNPTVLSYMDNLNANDFDVLINLFTPDGALQPPFQRPIVGKDAVLRF
FKEECQNLKLLPEKGVSEPAQDGFTQIKITGKVQTPWFGAGVGMNMAWRFLINPEGKIFFVAIDLLA

The query sequence (length=307) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7ekr:B 309 307 0.9772 0.9709 0.9772 0.0 7ekr:A
2 6pq1:A 320 307 0.7752 0.7438 0.7752 0.0
3 5ui2:A 316 307 0.7720 0.7500 0.7720 0.0 5ui2:B
4 7qd1:A 311 307 0.7687 0.7588 0.7687 0.0 7qcz:A, 7qd0:A, 7qd1:C, 7qd2:A, 7qd2:C
5 7zsg:1 314 307 0.7720 0.7548 0.7720 1.95e-180 3mg1:A, 3mg1:B, 3mg2:A, 3mg2:B, 3mg3:A, 3mg3:B, 7sc9:BH, 7sc9:CQ, 7sc9:DI, 7sc9:EA, 7scb:BH, 7scc:AS, 7scc:BP, 6t6k:A, 6t6m:A, 6t6o:A, 8to2:B, 8tpj:B, 5tuw:A, 5tuw:B, 5tuw:C, 5tuw:D, 5tuw:E, 5tuw:F, 5tux:A, 5tv0:A, 4xb4:A, 4xb4:B, 4xb5:A, 7zsf:A, 7zsh:1, 7zsi:1, 7zsj:1, 7zxv:A
6 5hgr:A 315 306 0.7492 0.7302 0.7516 1.50e-178 5hgr:B
7 8pyh:B 319 307 0.6287 0.6050 0.6287 1.83e-148 8pyh:A
8 8pzk:A 300 307 0.5863 0.6000 0.5863 5.21e-135
9 7ytf:A 309 307 0.5375 0.5340 0.5375 1.77e-122
10 8a0h:A 324 314 0.5407 0.5123 0.5287 4.64e-116
11 8qx5:A 158 148 0.2476 0.4810 0.5135 1.86e-47 8qx5:B
12 5fcx:A 139 142 0.1661 0.3669 0.3592 2.76e-24 5fcx:B
13 6mcj:B 145 138 0.1401 0.2966 0.3116 1.58e-18 6mcj:A
14 6uad:A 121 53 0.0554 0.1405 0.3208 0.019
15 1buq:A 125 54 0.0619 0.1520 0.3519 0.46 1buq:B, 3m8c:B, 3m8c:D, 3m8c:C, 3myt:A, 3myt:C, 3nbr:A, 3nhx:A, 3nuv:A, 3nuv:B, 1ogz:A, 1ohp:A, 1ohp:B, 1ohp:C, 1ohp:D, 1ohs:A, 1ohs:B, 1ohs:C, 3ov4:A, 3ov4:B, 3ov4:C, 1qjg:A, 1qjg:B, 1qjg:C, 1qjg:D, 1qjg:E, 1qjg:F, 5ugi:A
16 6z11:D 1254 180 0.1401 0.0343 0.2389 0.99 6ccv:D, 6eyd:D, 6f6w:D, 5tw1:D, 5vi5:D, 5vi8:D, 6vvs:D
17 5ck6:A 154 40 0.0554 0.1104 0.4250 1.2 5ck6:B, 5clk:A, 5clk:B, 5gkw:A, 1nu3:A, 1nu3:B, 1nww:A, 4xbt:A, 4xbt:C, 4xby:D, 4xby:B, 4xdv:C, 4xdv:D, 4xdv:A, 4xdv:B, 7xee:A, 7xee:B, 7xef:A, 7xef:B, 7xef:C, 7xef:D, 5yao:A, 5yng:A, 5yng:B, 5yqt:D
18 6cce:D 1195 183 0.1401 0.0360 0.2350 1.5
19 6vvt:D 1200 183 0.1401 0.0358 0.2350 1.6
20 6dcf:D 1176 183 0.1401 0.0366 0.2350 1.7 6vvv:D
21 4r9k:C 160 40 0.0554 0.1062 0.4250 1.7 5jpu:A, 5jpu:B, 4r9k:A, 4r9k:B, 4r9l:A, 4r9l:B
22 7z8i:F 279 66 0.0554 0.0609 0.2576 2.0
23 8ptk:C 375 66 0.0554 0.0453 0.2576 2.1 5adx:F, 5afu:F, 5afu:A, 5afu:B, 5afu:C, 5afu:D, 5afu:E, 5afu:G, 5afu:I, 6f1t:F, 6f1t:A, 6f1t:B, 6f1t:C, 6f1t:D, 6f1t:E, 6f1t:G, 6f1t:I, 6f1u:F, 6f1u:B, 6f1u:D, 6f38:F, 6f38:A, 6f38:B, 6f38:C, 6f38:D, 6f38:E, 6f38:G, 6f38:I, 6f3a:F, 6f3a:A, 6f3a:B, 6f3a:C, 6f3a:D, 6f3a:E, 6f3a:G, 6f3a:I, 5nw4:T, 8ptk:A, 8ptk:B, 8ptk:D, 8ptk:E, 8ptk:F, 8ptk:G, 8ptk:I, 7z8f:A, 7z8f:B, 7z8f:C, 7z8f:D, 7z8f:E, 7z8f:F, 7z8f:G, 7z8f:I, 7z8i:A, 7z8i:B, 7z8i:C, 7z8i:D, 7z8i:E, 7z8m:I, 7z8m:G, 6znl:A, 6znl:B, 6znl:C, 6znl:D, 6znl:E, 6znl:F, 6znl:G, 6znl:I, 6znm:G, 6znm:I, 6znn:G, 6znn:I, 6zno:G, 6zno:I, 6zo4:G, 6zo4:I
24 4rzm:B 283 42 0.0456 0.0495 0.3333 3.5 3rga:A, 4rzm:A
25 6uae:C 125 54 0.0586 0.1440 0.3333 4.5 6uae:A, 6uae:B, 6uae:D
26 8d0b:A 1116 38 0.0423 0.0116 0.3421 4.9 8d0k:A
27 3guz:B 167 25 0.0358 0.0659 0.4400 5.8 3guz:A
28 3pjr:A 646 76 0.0586 0.0279 0.2368 5.9 2pjr:A, 2pjr:B, 2pjr:F, 2pjr:G, 1qhh:A, 1qhh:D
29 8sad:A 398 44 0.0554 0.0427 0.3864 6.1 8sa7:A, 8sa7:B, 8sa8:A, 8sa8:D, 8sa8:B, 8sa8:C, 8sa9:A, 8sa9:B, 8saa:A, 8saa:B, 8sab:A, 8sab:B, 8sac:A, 8sac:D, 8sac:B, 8sac:C, 8sad:B, 8sae:A, 8sae:B, 8u98:A, 8u98:D, 8u98:B, 8u98:C, 8u99:A, 8u99:B
30 7u5c:E 1147 38 0.0423 0.0113 0.3421 6.5
31 3q10:A 285 27 0.0358 0.0386 0.4074 6.5 3q10:B, 3q10:C, 3q10:D, 3q12:A, 3q12:B, 3q12:C, 3q12:D
32 8soj:A 1158 38 0.0423 0.0112 0.3421 6.9 8sok:A
33 6csc:A 437 54 0.0586 0.0412 0.3333 7.7 1al6:A, 1amz:A, 1csc:A, 1csh:A, 1csi:A, 1csr:A, 1css:A, 2csc:A, 3csc:A, 4csc:A, 6csc:B, 2cts:A, 3cts:A, 4cts:A, 4cts:B, 5cts:A, 6cts:A, 3enj:A, 5uzp:A, 5uzp:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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