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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
FSTNRIYTLRLTRQFQFKINKQTTSVGNLIFNADYITFALDDFLQAVPNPHTLNFEDYRIKLAKMEMRPTGGHYTVQSDG
FGHTAVIQDSRITRFKTTADQTQDPLAPFDGAKKWFVSRGFKRLLRPKPQITIEDLTTANQSAALWLNSARTGWIPLQGG
PNSAGTKVRHYGIAFSFPQPEQTITYVTKLTLYVQFRQFAPNNPST

The query sequence (length=206) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5j37:E 206 206 1.0000 1.0000 1.0000 3.56e-154 5j37:B, 5j37:A, 5j37:D, 5j37:C
2 6ola:A0 196 210 0.3204 0.3367 0.3143 3.73e-14 6e2z:A6, 6e32:A1, 6e32:AN, 6e34:AA, 6e39:A1, 6e39:A5, 6ola:A1, 6ola:A2, 6ola:A3, 6ola:A4, 6ola:A5, 6ola:A6, 6ola:A7, 6ola:A8, 6ola:A9, 6ola:AA, 6ola:AB, 6ola:AC, 6ola:AD, 6ola:AE, 6ola:AF, 6ola:AG, 6ola:AH, 6ola:AI, 6ola:AJ, 6ola:AK, 6ola:AL, 6ola:AM, 6ola:AN, 6ola:AO, 6ola:AP, 6ola:AQ, 6ola:AR, 6ola:AS, 6ola:AT, 6ola:AU, 6ola:AV, 6ola:AW, 6ola:AX, 6ola:AY, 6ola:AZ, 6ola:Aa, 6ola:Ab, 6ola:Ac, 6ola:Ad, 6ola:Ae, 6ola:Af, 6ola:Ag, 6ola:Ah, 6ola:Ai, 6ola:Aj, 6ola:Ak, 6ola:Al, 6ola:Am, 6ola:An, 6ola:Ao, 6ola:Ap, 6ola:Aq, 6ola:Ar, 6ola:As, 6ola:At, 6ola:Au, 6ola:Av, 6ola:Aw, 6ola:Ax, 3r0r:A
3 5vit:A 548 46 0.0631 0.0237 0.2826 2.8 5vit:P, 5vit:I, 5vit:V
4 5k8e:A 473 66 0.1117 0.0486 0.3485 4.4 5l6f:A, 5l6g:A
5 7orm:A 2145 82 0.0922 0.0089 0.2317 6.5
6 1dpu:A 69 26 0.0437 0.1304 0.3462 7.3 4mqv:A, 4mqv:C
7 4v6w:Ck 70 46 0.0631 0.1857 0.2826 8.2 6xu6:Ck, 6xu7:Ck, 6xu8:Ck

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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