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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
FSRRRIAYPFYPFKKLGRQHPKKHDTNLKTAMRQFLGPKNYKGEYVMNKYFTVPTNHVPNYIKPDLERGQSLEHPVTKKP
LQLRYDGTLGPPPVENKRLQNIFKDRLLQPFPSNPHCKTNYVLSPQLKQSIFEEITVEGLSAQQVSQKYGLKIPRVEAIV
KLVSVENSWNRRNRVSSDLKTMDETLYRMFPVFDSNTKVIYGELVEGERSQYKFTNAKVGKVGYRYGSGNRDNKKDRRIG
FNKLGQMVYI

The query sequence (length=250) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8d8k:6 251 251 1.0000 0.9960 0.9960 0.0 8d8j:6
2 8om2:6 319 197 0.7800 0.6113 0.9898 5.50e-145 8d8l:6, 5mrc:66, 5mre:66, 5mrf:66, 8om3:6, 8om4:6
3 8om2:6 319 57 0.2200 0.1724 0.9649 8.98e-31 8d8l:6, 5mrc:66, 5mre:66, 5mrf:66, 8om3:6, 8om4:6
4 6yw5:66 283 66 0.1000 0.0883 0.3788 5.49e-09 6ywe:66, 6ywx:66, 6ywy:66
5 3bga:A 1003 134 0.1480 0.0369 0.2761 0.054 3bga:B
6 7nwf:A 432 99 0.1240 0.0718 0.3131 0.26 6t8k:A, 6t8k:B, 6t8l:A, 6tcw:A
7 6tcv:B 397 95 0.1240 0.0781 0.3263 0.31
8 2e2z:A 100 43 0.0720 0.1800 0.4186 0.38
9 8buu:9 573 75 0.0840 0.0366 0.2800 1.6
10 5fg3:A 598 117 0.1120 0.0468 0.2393 5.3 5yt0:A
11 4p92:A 233 69 0.0800 0.0858 0.2899 7.2
12 7nac:5 141 103 0.1000 0.1773 0.2427 9.2 7nad:5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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