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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
FSRRRIAYPFYPFKKLGRQHPKKHDTNLKTAMRQFLGPKNYKGEYVMNKYFTVPTNHVPNYIKPDLERGQSLEHPVTKKP
LQLRYDGTLGPPPVENKRLQNIFKDRLLQPFPSNPHCKTNYVLSPQLKQSIFEEITVEGLSAQQVSQKYGLKIPRVEAIV
KLVSVENSWNRRNRVSSDLKTMDETLYRMFPVFDSDASFKRENLSEIPVPQKTLASRFLTIAESEPFGPVDAAHVLELEP
AVETLRNLSTNTKVIYGELVEGERSQYKFTNAKVGKVGYRYGSGNRDNKKDRRIGFNKLGQMVYI

The query sequence (length=305) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8om2:6 319 319 1.0000 0.9561 0.9561 0.0 8d8l:6, 5mrc:66, 5mre:66, 5mrf:66, 8om3:6, 8om4:6
2 8d8k:6 251 305 0.7639 0.9283 0.7639 1.28e-158 8d8j:6
3 6yw5:66 283 143 0.1311 0.1413 0.2797 1.60e-10 6ywe:66, 6ywx:66, 6ywy:66
4 7nwf:A 432 99 0.1016 0.0718 0.3131 0.26 6t8k:A, 6t8k:B, 6t8l:A, 6tcw:A
5 6tcv:B 397 94 0.1016 0.0781 0.3298 0.34
6 2e2z:A 100 41 0.0525 0.1600 0.3902 1.1
7 8buu:9 573 75 0.0689 0.0366 0.2800 1.7
8 6jem:A 440 40 0.0426 0.0295 0.3250 3.0 6jem:B, 6jem:C, 6jen:A, 6jen:B, 6jen:C
9 2pw6:A 244 65 0.0754 0.0943 0.3538 5.9
10 5de0:B 298 56 0.0590 0.0604 0.3214 9.7 5de0:A, 5de0:C, 5de0:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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