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BioLiP
>protein
FSRKTNRLPALSLAGSVFGGVLAVFLVWYYFSPEFYEVGYAPPYSHRIHVGKLGLDCRYCHNWVEVSDKANIPPTQTCIN
CHSQILTDSPRLQAVRDSWATDRSIEWVKVHHLPDYAHFSHASHVNNGVGCETCHGRIDQMDVVRLVEPLSMGWCLECHR
QPELYLRPQSEITTMGYQPPADYIERNLERIRKEGIRPPTNCSACHY

The query sequence (length=207) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6f0k:A 207 207 1.0000 1.0000 1.0000 2.81e-158
2 8k9e:A 218 214 0.4783 0.4541 0.4626 9.39e-67 8k9f:A, 8x2j:A
3 6lod:A 218 216 0.4734 0.4495 0.4537 8.75e-62 6loe:A
4 6btm:A 221 224 0.2995 0.2805 0.2768 1.63e-32
5 6h5l:A 506 166 0.1884 0.0771 0.2349 0.066
6 8bcx:D 444 64 0.1063 0.0495 0.3438 0.23 8bcx:A, 8bcx:B, 8bcx:C
7 3ov0:A 318 102 0.1256 0.0818 0.2549 0.33 3oue:A, 3ouq:A, 1rwj:A
8 3ov0:A 318 143 0.1691 0.1101 0.2448 7.6 3oue:A, 3ouq:A, 1rwj:A
9 3o70:A 55 51 0.0628 0.2364 0.2549 0.84 3o7a:A
10 3bnf:A 471 67 0.0966 0.0425 0.2985 0.84 3bng:A, 3bnh:A, 3bnj:A, 2e80:A, 2e81:A, 1fs7:A, 1fs8:A, 1fs9:A
11 3ucp:A 800 83 0.1111 0.0288 0.2771 0.88 3ufh:A, 3ufk:A
12 7o7g:A 627 150 0.1643 0.0542 0.2267 1.3 4lm8:A, 8qbq:A, 8qbz:A, 8qc9:A, 7qth:A
13 1qdb:A 473 68 0.1063 0.0465 0.3235 2.9 1qdb:B, 1qdb:C
14 7c79:L 131 44 0.0918 0.1450 0.4318 3.1 7c7a:L, 6w6v:L
15 7v28:B 425 50 0.0725 0.0353 0.3000 4.4 7fjl:A, 7fjl:B, 7fjl:C, 7fjl:D, 7fjl:E, 7fjl:F, 7v25:B, 7v25:A, 7v25:C, 7v25:D, 7v25:E, 7v25:F, 7v28:A, 7v28:C, 7v28:D, 7v28:E, 7v28:F
16 2ozy:A 142 95 0.1353 0.1972 0.2947 5.5 2p0b:A
17 6ee7:A 91 29 0.0483 0.1099 0.3448 6.5 1m1p:A, 1m1p:B, 1m1p:C, 1m1p:D, 1m1p:E, 1m1p:F, 1m1q:A, 1m1r:A
18 1oah:B 482 57 0.0773 0.0332 0.2807 6.7 1oah:A
19 6mvd:A 376 76 0.0918 0.0505 0.2500 6.7 6mvd:B
20 7qhv:AAA 390 90 0.1014 0.0538 0.2333 7.4 7ofy:A, 7ofy:B, 7qhv:BBB, 8s5b:A, 7yzs:AAA, 7yzu:A
21 9aue:A 415 41 0.0580 0.0289 0.2927 9.3 9au3:A, 9b0c:A
22 1gu6:A 441 55 0.0821 0.0385 0.3091 9.5 1gu6:G, 1gu6:C, 1gu6:E, 3l1t:A, 3l1t:B, 3l1t:C, 3l1t:D, 2rdz:A, 2rdz:B, 2rdz:C, 2rdz:D, 2rf7:A, 2rf7:B, 2rf7:C, 2rf7:D, 3tor:A, 3tor:D, 3tor:B, 3tor:C, 4wjy:A, 4wjy:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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