Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
FSKKQLKVLTWWRKASPVSDKDGIICDGSIRAGKTIVMSFSYVMWAMDTFNEQNFGMAGKTIGALRRNVITPLKRMLKSR
GYRVKDHRADNYLTITFKGKTNYFYLFGGKDESSQDLIQGITLAGMFFDEVALMPESFVNQATARCSVDGAKLWFNCNPA
GPYHWFKVEYLDKLDEKNLLHLHFTMDDNLSLSKQVKERYQRMYKGVFYQRYILGLWVLAEGIIYDMFDQDEHVVPTVPR
PYEKYYVSCDYGTQNPTTFGLWGLYNGVWYKVKEYHYDGRKENKQKTDQEYYEDLMKFIEDIEKHKFKGVIVDPSAASFI
ALLRQKGIKVIKAKNDVLDGIRNVATALNKKMILYNDCCKETFREYSSYVWDEKAAERGEDKPVKQNDHQLDADRYFVNT
ILFG

The query sequence (length=404) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5oea:B 409 404 1.0000 0.9878 1.0000 0.0 5oea:A, 5oea:D, 5oea:E, 5oeb:B
2 8sgh:A 844 81 0.0520 0.0249 0.2593 0.14 7cyl:A, 4fdd:A, 4fq3:A, 2h4m:A, 5j3v:A, 5j3v:B, 4jlq:A, 4oo6:A, 2ot8:A, 5tqc:A, 7vpw:A, 5yvi:A, 2z5k:A, 2z5m:A, 2z5n:A, 2z5o:A
3 5yvg:A 830 76 0.0470 0.0229 0.2500 0.94 2h4m:B, 2ot8:B, 5yvh:A
4 7ua3:A 4443 61 0.0446 0.0041 0.2951 1.1 7ua3:B, 7ua3:C, 7ua3:D, 7ua4:A, 7ua4:B, 7ua4:C, 7ua4:D
5 8uxh:A 4004 61 0.0495 0.0050 0.3279 2.3 8uxh:B, 8uxh:C, 8uxh:D, 8uxi:A, 8uxi:B, 8uxi:C, 8uxi:D
6 8uxl:A 4232 61 0.0495 0.0047 0.3279 2.3 7u9q:A, 7u9q:D, 7u9q:B, 7u9q:C, 7u9r:A, 7u9r:D, 7u9r:B, 7u9r:C, 7u9t:A, 7u9t:D, 7u9t:B, 7u9t:C, 7u9x:A, 7u9x:B, 7u9x:C, 7u9x:D, 7u9z:A, 7u9z:B, 7u9z:C, 7u9z:D, 7ua1:A, 7ua1:B, 7ua1:C, 7ua1:D, 7ua5:A, 7ua5:B, 7ua5:C, 7ua5:D, 7ua9:A, 7ua9:B, 7ua9:C, 7ua9:D, 8uq2:A, 8uq2:B, 8uq2:C, 8uq2:D, 8uq3:A, 8uq3:B, 8uq3:C, 8uq3:D, 8uq4:A, 8uq4:B, 8uq4:C, 8uq4:D, 8uq5:A, 8uq5:B, 8uq5:C, 8uq5:D, 8uxc:A, 8uxc:B, 8uxc:C, 8uxc:D, 8uxe:A, 8uxe:B, 8uxe:C, 8uxe:D, 8uxf:A, 8uxf:B, 8uxf:C, 8uxf:D, 8uxg:A, 8uxg:B, 8uxg:C, 8uxg:D, 8uxl:B, 8uxl:C, 8uxl:D, 8uxm:A, 8uxm:B, 8uxm:C, 8uxm:D
7 6hwj:A 428 69 0.0594 0.0561 0.3478 2.5 6hwj:B, 6hwk:A, 6hwk:C, 6hwk:D, 6hwl:B
8 7kgz:B 634 53 0.0421 0.0268 0.3208 7.0 7kgz:A
9 8dtz:A 4061 88 0.0569 0.0057 0.2614 7.6 8dtz:B, 8dtz:C, 8dtz:D
10 4gun:A 205 57 0.0421 0.0829 0.2982 7.6 4gun:B, 4gun:C, 4gun:D, 4gun:E, 4gun:F, 4gun:G, 4gun:H, 4gun:I, 4gun:J, 4gun:K, 4gun:L, 4gun:M, 4gun:N, 4gun:O, 4gun:P, 3qvn:A
11 8dty:A 4004 88 0.0569 0.0057 0.2614 8.1 8dty:B, 8dty:C, 8dty:D
12 6wou:A 3921 88 0.0569 0.0059 0.2614 8.2 6wou:B, 6wou:C, 6wou:D, 6wov:A, 6wov:B, 6wov:C, 6wov:D
13 4pfx:A 277 42 0.0297 0.0433 0.2857 8.2 4phr:A, 4phs:A
14 7d4k:A 444 167 0.1015 0.0923 0.2455 9.0 7d4k:B, 7d4m:A, 7d4m:B, 7d4n:A, 7d4n:B
15 6znq:B 711 31 0.0322 0.0183 0.4194 9.4 6znp:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218