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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
FSFSPEPTLEDIRRLHAEFAAERDWEQFHQPRNLLLALVGEVGELAELFQWKTDGPQGWSPRERAALQEELSDVLIYLVA
LAARCRVDLPLAVLSKMDINRRRYP

The query sequence (length=105) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7mu5:A 110 108 1.0000 0.9545 0.9722 3.32e-71 7mu5:E, 7mu5:B, 7mu5:H, 7mu5:C, 7mu5:D, 7mu5:F, 7mu5:G
2 6sqw:A 114 108 0.9048 0.8333 0.8796 6.99e-65 2oig:B, 2oig:A, 2oig:D, 6sqw:D, 6sqy:A, 6sqy:D, 6sqz:A, 6sqz:D
3 4qgp:A 108 99 0.3333 0.3241 0.3535 6.10e-16 4qgp:B
4 2q5z:B 94 77 0.2571 0.2872 0.3506 8.79e-04 2q5z:A, 2q73:A, 2q73:B, 2q73:C, 2q73:D, 2q9l:A, 2q9l:B, 2q9l:C, 2q9l:D
5 5ie9:C 95 67 0.1905 0.2105 0.2985 0.065 5ie9:A, 5ie9:B, 5ie9:D
6 7ody:C 100 34 0.1429 0.1500 0.4412 0.68 7ody:A, 7ody:B, 7ody:D
7 9f2k:A 513 22 0.1048 0.0214 0.5000 1.3
8 9d93:Oa 595 12 0.0571 0.0101 0.5000 4.3 9d93:Oc, 9d93:Ob
9 4dl8:A 224 71 0.1619 0.0759 0.2394 4.6 4dk4:A, 4dk4:B, 4dkb:A, 4dlc:A
10 5yip:A 123 56 0.1333 0.1138 0.2500 5.6 7aa7:A, 7aa7:B, 7aa9:A, 7aa9:E, 7aa9:C, 7aa9:I, 7aa9:G, 7aa9:K, 7cdb:A, 7cdb:B, 6hoi:B, 6hoi:A, 6hol:A, 6hol:B, 7jhx:A, 7jhx:B, 2l8j:A, 5lxh:A, 5lxh:B, 5lxh:C, 5lxi:D, 5lxi:B, 8x8a:A, 6yoo:A
11 3frh:A 241 32 0.1143 0.0498 0.3750 6.5 3b89:A, 3fri:A
12 8agd:A 1111 59 0.1810 0.0171 0.3220 6.5 8acq:A, 8acq:C, 8acq:B, 8ae1:A, 8ae1:B, 8ae1:C, 8agd:C, 8agd:B, 7zgy:A, 7zgy:C, 7zgy:B
13 5euf:B 416 35 0.1048 0.0264 0.3143 6.7 5euf:A
14 4u08:A 391 55 0.1714 0.0460 0.3273 8.6 4u08:B
15 4ry8:B 321 19 0.0952 0.0312 0.5263 8.9 4ry8:A, 4ry8:C, 4ry8:D
16 1g6u:A 48 31 0.1143 0.2500 0.3871 9.7 1g6u:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218