Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
FRYMPFSPAGTPFGFTDRRYLTMNEVGYVSTVKNSEQYSITVSFFDVGRFREYHFEDLFGYDLCFLNEKGTLFGQSKTGQ
IQYRPHDSIHSNWTKIIPLQAGERITSVAATPVRVIVGTSLGYFRSFNQFGVPFAVEKTSPIVALTAQNYRVFSVHYSQF
HGLSYSLSELGTSSKRYYKRECPLPMSLPNINSDMKKDANLDYYNFNPMGIKSLFFSSYGDPCIFGSDNTLLLLSKWRSP
EESKWLPILDSNMEIWKMSGGKETTDIHVWPLALAYDTLNCILVKGKHIWPEFPLPLPSEMEIRMPVFVKSKLLEENKEI
QIPVSMAAEEEYLRSKVLSELLTDTLENDGEMYGNENEVLAALNGAYDKALLRLFASACSDQNVEKALSLAHELKQDRAL
TAAVKISERAELPSLVKKINNIREARYEQQLK

The query sequence (length=432) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5hog:B 432 432 1.0000 1.0000 1.0000 0.0 4c93:A, 4c93:B, 4c95:A, 4c95:B, 5hog:A, 5hoi:A, 5hoi:B, 5hoi:C, 5nxq:A, 5nxq:B
2 7cdw:A 683 175 0.1019 0.0644 0.2514 0.11 7cdw:B
3 3a8u:X 441 57 0.0417 0.0408 0.3158 0.88
4 7m4u:n 100 40 0.0347 0.1500 0.3750 4.1 7m4w:n, 7m4x:n, 7m4y:n, 7m4z:n, 7ryf:n, 7ryg:n, 7ryh:n, 7uvv:n, 7uvw:n, 7uvx:n, 7uvy:n, 7uvz:n, 7uw1:n, 6v39:n, 6v3a:n, 6v3b:n, 6v3e:n, 6ys5:o, 6ytf:o
5 4nvr:A 302 55 0.0394 0.0563 0.3091 6.2 4nvr:B, 4nvr:C, 4nvr:D
6 1js8:A 382 53 0.0394 0.0445 0.3208 6.3 1js8:B
7 4f48:B 97 35 0.0301 0.1340 0.3714 7.0
8 5dl7:A 402 44 0.0347 0.0373 0.3409 7.8
9 5yrt:B 182 29 0.0255 0.0604 0.3793 9.4 3auj:B, 3auj:E, 1dio:B, 1dio:E, 1eex:B, 1eex:E, 1egm:B, 1egm:E, 1egv:B, 1egv:E, 1iwb:B, 1iwb:E, 1uc4:B, 1uc4:E, 1uc5:B, 1uc5:E, 7xrk:B, 7xrk:E, 7xrl:B, 7xrl:E, 5yrt:E, 5yrt:H, 5yrt:K, 5yrv:B, 5yrv:E, 5yrv:H, 5yrv:K, 5ysh:B, 5ysh:E, 5ysh:H, 5ysh:K
10 1ox4:B 538 61 0.0394 0.0316 0.2787 9.5 1jvn:B, 1ox4:A, 1ox5:A, 1ox5:B, 1ox6:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218